README.md

metadata

title: Serotype k-mer classifier (STRICT uniques)
emoji: 🧬
sdk: streamlit
app_file: app.py
pinned: false

Citation Mhimdi et al.; Genomic Surveillance Reveals Vaccine-Associated Shifts in Pediatric Invasive Streptococcus pneumoniae in Tunisia Vaccines 2026, 14, 27 https://doi.org/10.3390/vaccines14010027

Serotype k-mer classifier — STRICT uniques (Streamlit)

Upload known and unknown sequences as FASTA files or a ZIP containing multiple FASTA files. Choose DNA/Protein, enter k values, and click Run. The app computes strictly unique k-mers per serotype across k and classifies unknowns.