Spaces:
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Update app.py
#10
by
OmarOmar91
- opened
app.py
CHANGED
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@@ -1,124 +1,687 @@
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--card-bg: #ffffff;
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--card-brd: #e2e8f0; /* slate-200 */
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}
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border-radius: 14px !important;
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}
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.gradio-container .gr-input,
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.gradio-container .gr-textbox textarea {
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background: #ffffff !important;
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color: #0f172a !important;
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border: 1px solid #cbd5e1 !important; /* slate-300 */
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}
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}
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/* Blue: text-like fields & sliders */
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.gradio-container .gr-textbox label,
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.gradio-container .gr-markdown h1,
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.gradio-container .gr-markdown h2,
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.gradio-container .gr-markdown h3,
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.gradio-container .gr-slider label {
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color: #1d4ed8 !important; /* blue-700 */
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font-weight: 700 !important;
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text-shadow: 0 0 0.01px rgba(29,78,216,0.3);
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}
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text-shadow: 0 0 0.01px rgba(22,101,52,0.3);
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}
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font-weight: 800 !important;
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}
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}
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"""
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# Tailwind-like hues mapped into Gradio theme tokens
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theme = gr.themes.Soft(
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primary_hue="blue",
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neutral_hue="slate"
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).set(
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body_background_fill="#
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body_text_color="#
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input_background_fill="#
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input_border_color="#
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button_primary_background_fill="#
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button_primary_text_color="#ffffff",
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button_secondary_background_fill="#
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button_secondary_text_color="#
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radius_large="14px",
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spacing_size="8px"
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)
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# ================================================================
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# Self-Sensing Concrete Assistant — Predictor (XGB) + Hybrid RAG
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# - Predictor tab: identical behavior to your "second code"
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# - Literature tab: from your "first code" (Hybrid RAG + MMR)
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# - Hugging Face friendly: online PDF fetching OFF by default
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# ================================================================
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# ---------------------- Runtime flags (HF-safe) ----------------------
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import os
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os.environ["TRANSFORMERS_NO_TF"] = "1"
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os.environ["TRANSFORMERS_NO_FLAX"] = "1"
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os.environ["TOKENIZERS_PARALLELISM"] = "false"
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# ------------------------------- Imports ------------------------------
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import re, time, joblib, warnings, json
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from pathlib import Path
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from typing import List, Dict, Any
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import numpy as np
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import pandas as pd
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import gradio as gr
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warnings.filterwarnings("ignore", category=UserWarning)
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# Optional deps (handled gracefully if missing)
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USE_DENSE = True
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try:
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from sentence_transformers import SentenceTransformer
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except Exception:
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USE_DENSE = False
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try:
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from rank_bm25 import BM25Okapi
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except Exception:
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BM25Okapi = None
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print("rank_bm25 not installed; BM25 disabled (TF-IDF still works).")
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# Optional OpenAI (for LLM paraphrase)
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+
OPENAI_API_KEY = os.getenv("OPENAI_API_KEY")
|
| 40 |
+
OPENAI_MODEL = os.getenv("OPENAI_MODEL", "gpt-5")
|
| 41 |
+
try:
|
| 42 |
+
from openai import OpenAI
|
| 43 |
+
except Exception:
|
| 44 |
+
OpenAI = None
|
| 45 |
|
| 46 |
+
# ========================= Predictor (kept same as 2nd) =========================
|
| 47 |
+
CF_COL = "Conductive Filler Conc. (wt%)"
|
| 48 |
+
TARGET_COL = "Stress GF (MPa-1)"
|
|
|
|
|
|
|
| 49 |
|
| 50 |
+
MAIN_VARIABLES = [
|
| 51 |
+
"Filler 1 Type",
|
| 52 |
+
"Filler 1 Diameter (µm)",
|
| 53 |
+
"Filler 1 Length (mm)",
|
| 54 |
+
CF_COL,
|
| 55 |
+
"Filler 1 Dimensionality",
|
| 56 |
+
"Filler 2 Type",
|
| 57 |
+
"Filler 2 Diameter (µm)",
|
| 58 |
+
"Filler 2 Length (mm)",
|
| 59 |
+
"Filler 2 Dimensionality",
|
| 60 |
+
"Specimen Volume (mm3)",
|
| 61 |
+
"Probe Count",
|
| 62 |
+
"Probe Material",
|
| 63 |
+
"W/B",
|
| 64 |
+
"S/B",
|
| 65 |
+
"Gauge Length (mm)",
|
| 66 |
+
"Curing Condition",
|
| 67 |
+
"Number of Fillers",
|
| 68 |
+
"Drying Temperature (°C)",
|
| 69 |
+
"Drying Duration (hr)",
|
| 70 |
+
"Loading Rate (MPa/s)",
|
| 71 |
+
"Modulus of Elasticity (GPa)",
|
| 72 |
+
"Current Type",
|
| 73 |
+
"Applied Voltage (V)"
|
| 74 |
+
]
|
| 75 |
+
|
| 76 |
+
NUMERIC_COLS = {
|
| 77 |
+
"Filler 1 Diameter (µm)",
|
| 78 |
+
"Filler 1 Length (mm)",
|
| 79 |
+
CF_COL,
|
| 80 |
+
"Filler 2 Diameter (µm)",
|
| 81 |
+
"Filler 2 Length (mm)",
|
| 82 |
+
"Specimen Volume (mm3)",
|
| 83 |
+
"Probe Count",
|
| 84 |
+
"W/B",
|
| 85 |
+
"S/B",
|
| 86 |
+
"Gauge Length (mm)",
|
| 87 |
+
"Number of Fillers",
|
| 88 |
+
"Drying Temperature (°C)",
|
| 89 |
+
"Drying Duration (hr)",
|
| 90 |
+
"Loading Rate (MPa/s)",
|
| 91 |
+
"Modulus of Elasticity (GPa)",
|
| 92 |
+
"Applied Voltage (V)"
|
| 93 |
}
|
| 94 |
|
| 95 |
+
CATEGORICAL_COLS = {
|
| 96 |
+
"Filler 1 Type",
|
| 97 |
+
"Filler 1 Dimensionality",
|
| 98 |
+
"Filler 2 Type",
|
| 99 |
+
"Filler 2 Dimensionality",
|
| 100 |
+
"Probe Material",
|
| 101 |
+
"Curing Condition",
|
| 102 |
+
"Current Type"
|
| 103 |
}
|
| 104 |
|
| 105 |
+
DIM_CHOICES = ["0D", "1D", "2D", "3D", "NA"]
|
| 106 |
+
CURRENT_CHOICES = ["DC", "AC", "NA"]
|
| 107 |
+
|
| 108 |
+
MODEL_CANDIDATES = [
|
| 109 |
+
"stress_gf_xgb.joblib",
|
| 110 |
+
"models/stress_gf_xgb.joblib",
|
| 111 |
+
"/home/user/app/stress_gf_xgb.joblib",
|
| 112 |
+
]
|
| 113 |
+
|
| 114 |
+
def _load_model_or_error():
|
| 115 |
+
for p in MODEL_CANDIDATES:
|
| 116 |
+
if os.path.exists(p):
|
| 117 |
+
try:
|
| 118 |
+
return joblib.load(p)
|
| 119 |
+
except Exception as e:
|
| 120 |
+
return f"Could not load model from {p}: {e}"
|
| 121 |
+
return ("Model file not found. Upload your trained pipeline as "
|
| 122 |
+
"stress_gf_xgb.joblib (or put it in models/).")
|
| 123 |
+
|
| 124 |
+
def _coerce_to_row(form_dict: dict) -> pd.DataFrame:
|
| 125 |
+
row = {}
|
| 126 |
+
for col in MAIN_VARIABLES:
|
| 127 |
+
v = form_dict.get(col, None)
|
| 128 |
+
if col in NUMERIC_COLS:
|
| 129 |
+
if v in ("", None):
|
| 130 |
+
row[col] = np.nan
|
| 131 |
+
else:
|
| 132 |
+
try:
|
| 133 |
+
row[col] = float(v)
|
| 134 |
+
except Exception:
|
| 135 |
+
row[col] = np.nan
|
| 136 |
+
else:
|
| 137 |
+
row[col] = "" if v in (None, "NA") else str(v).strip()
|
| 138 |
+
return pd.DataFrame([row], columns=MAIN_VARIABLES)
|
| 139 |
+
|
| 140 |
+
def predict_fn(**kwargs):
|
| 141 |
+
mdl = _load_model_or_error()
|
| 142 |
+
if isinstance(mdl, str):
|
| 143 |
+
return mdl
|
| 144 |
+
X_new = _coerce_to_row(kwargs)
|
| 145 |
+
try:
|
| 146 |
+
y_log = mdl.predict(X_new) # model predicts log1p(target)
|
| 147 |
+
y = float(np.expm1(y_log)[0]) # back to original scale MPa^-1
|
| 148 |
+
if -1e-10 < y < 0:
|
| 149 |
+
y = 0.0
|
| 150 |
+
return y
|
| 151 |
+
except Exception as e:
|
| 152 |
+
return f"Prediction error: {e}"
|
| 153 |
+
|
| 154 |
+
EXAMPLE = {
|
| 155 |
+
"Filler 1 Type": "CNT",
|
| 156 |
+
"Filler 1 Dimensionality": "1D",
|
| 157 |
+
"Filler 1 Diameter (µm)": 0.02,
|
| 158 |
+
"Filler 1 Length (mm)": 1.2,
|
| 159 |
+
CF_COL: 0.5,
|
| 160 |
+
"Filler 2 Type": "",
|
| 161 |
+
"Filler 2 Dimensionality": "NA",
|
| 162 |
+
"Filler 2 Diameter (µm)": None,
|
| 163 |
+
"Filler 2 Length (mm)": None,
|
| 164 |
+
"Specimen Volume (mm3)": 1000,
|
| 165 |
+
"Probe Count": 2,
|
| 166 |
+
"Probe Material": "Copper",
|
| 167 |
+
"W/B": 0.4,
|
| 168 |
+
"S/B": 2.5,
|
| 169 |
+
"Gauge Length (mm)": 20,
|
| 170 |
+
"Curing Condition": "28d water, 20°C",
|
| 171 |
+
"Number of Fillers": 1,
|
| 172 |
+
"Drying Temperature (°C)": 60,
|
| 173 |
+
"Drying Duration (hr)": 24,
|
| 174 |
+
"Loading Rate (MPa/s)": 0.1,
|
| 175 |
+
"Modulus of Elasticity (GPa)": 25,
|
| 176 |
+
"Current Type": "DC",
|
| 177 |
+
"Applied Voltage (V)": 5.0,
|
| 178 |
}
|
| 179 |
|
| 180 |
+
def _fill_example():
|
| 181 |
+
return [EXAMPLE.get(k, None) for k in MAIN_VARIABLES]
|
| 182 |
+
|
| 183 |
+
def _clear_all():
|
| 184 |
+
cleared = []
|
| 185 |
+
for col in MAIN_VARIABLES:
|
| 186 |
+
if col in NUMERIC_COLS:
|
| 187 |
+
cleared.append(None)
|
| 188 |
+
elif col in {"Filler 1 Dimensionality", "Filler 2 Dimensionality"}:
|
| 189 |
+
cleared.append("NA")
|
| 190 |
+
elif col == "Current Type":
|
| 191 |
+
cleared.append("NA")
|
| 192 |
+
else:
|
| 193 |
+
cleared.append("")
|
| 194 |
+
return cleared
|
| 195 |
+
|
| 196 |
+
# ========================= Hybrid RAG (from 1st code) =========================
|
| 197 |
+
# Configuration
|
| 198 |
+
ARTIFACT_DIR = Path("rag_artifacts"); ARTIFACT_DIR.mkdir(exist_ok=True)
|
| 199 |
+
TFIDF_VECT_PATH = ARTIFACT_DIR / "tfidf_vectorizer.joblib"
|
| 200 |
+
TFIDF_MAT_PATH = ARTIFACT_DIR / "tfidf_matrix.joblib"
|
| 201 |
+
BM25_TOK_PATH = ARTIFACT_DIR / "bm25_tokens.joblib"
|
| 202 |
+
EMB_NPY_PATH = ARTIFACT_DIR / "chunk_embeddings.npy"
|
| 203 |
+
RAG_META_PATH = ARTIFACT_DIR / "chunks.parquet"
|
| 204 |
+
|
| 205 |
+
# PDF source (HF-safe: rely on local /papers by default)
|
| 206 |
+
LOCAL_PDF_DIR = Path("papers"); LOCAL_PDF_DIR.mkdir(exist_ok=True)
|
| 207 |
+
USE_ONLINE_SOURCES = os.getenv("USE_ONLINE_SOURCES", "false").lower() == "true"
|
| 208 |
+
|
| 209 |
+
# Retrieval weights
|
| 210 |
+
W_TFIDF_DEFAULT = 0.50 if not USE_DENSE else 0.30
|
| 211 |
+
W_BM25_DEFAULT = 0.50 if not USE_DENSE else 0.30
|
| 212 |
+
W_EMB_DEFAULT = 0.00 if not USE_DENSE else 0.40
|
| 213 |
+
|
| 214 |
+
# Simple text processing
|
| 215 |
+
_SENT_SPLIT_RE = re.compile(r"(?<=[.!?])\s+|\n+")
|
| 216 |
+
TOKEN_RE = re.compile(r"[A-Za-z0-9_#+\-/\.%]+")
|
| 217 |
+
def sent_split(text: str) -> List[str]:
|
| 218 |
+
sents = [s.strip() for s in _SENT_SPLIT_RE.split(text) if s.strip()]
|
| 219 |
+
return [s for s in sents if len(s.split()) >= 5]
|
| 220 |
+
def tokenize(text: str) -> List[str]:
|
| 221 |
+
return [t.lower() for t in TOKEN_RE.findall(text)]
|
| 222 |
+
|
| 223 |
+
# PDF text extraction (PyMuPDF preferred; pypdf fallback)
|
| 224 |
+
def _extract_pdf_text(pdf_path: Path) -> str:
|
| 225 |
+
try:
|
| 226 |
+
import fitz
|
| 227 |
+
doc = fitz.open(pdf_path)
|
| 228 |
+
out = []
|
| 229 |
+
for i, page in enumerate(doc):
|
| 230 |
+
out.append(f"[[PAGE={i+1}]]\n{page.get_text('text') or ''}")
|
| 231 |
+
return "\n\n".join(out)
|
| 232 |
+
except Exception:
|
| 233 |
+
try:
|
| 234 |
+
from pypdf import PdfReader
|
| 235 |
+
reader = PdfReader(str(pdf_path))
|
| 236 |
+
out = []
|
| 237 |
+
for i, p in enumerate(reader.pages):
|
| 238 |
+
txt = p.extract_text() or ""
|
| 239 |
+
out.append(f"[[PAGE={i+1}]]\n{txt}")
|
| 240 |
+
return "\n\n".join(out)
|
| 241 |
+
except Exception as e:
|
| 242 |
+
print(f"PDF read error ({pdf_path}): {e}")
|
| 243 |
+
return ""
|
| 244 |
+
|
| 245 |
+
def chunk_by_sentence_windows(text: str, win_size=8, overlap=2) -> List[str]:
|
| 246 |
+
sents = sent_split(text)
|
| 247 |
+
chunks, step = [], max(1, win_size - overlap)
|
| 248 |
+
for i in range(0, len(sents), step):
|
| 249 |
+
window = sents[i:i+win_size]
|
| 250 |
+
if not window: break
|
| 251 |
+
chunks.append(" ".join(window))
|
| 252 |
+
return chunks
|
| 253 |
+
|
| 254 |
+
def _safe_init_st_model(name: str):
|
| 255 |
+
global USE_DENSE
|
| 256 |
+
if not USE_DENSE:
|
| 257 |
+
return None
|
| 258 |
+
try:
|
| 259 |
+
return SentenceTransformer(name)
|
| 260 |
+
except Exception as e:
|
| 261 |
+
print("Dense embeddings unavailable:", e)
|
| 262 |
+
USE_DENSE = False
|
| 263 |
+
return None
|
| 264 |
+
|
| 265 |
+
# Build or load index
|
| 266 |
+
def build_or_load_hybrid(pdf_dir: Path):
|
| 267 |
+
have_cache = (TFIDF_VECT_PATH.exists() and TFIDF_MAT_PATH.exists()
|
| 268 |
+
and RAG_META_PATH.exists()
|
| 269 |
+
and (BM25_TOK_PATH.exists() or BM25Okapi is None)
|
| 270 |
+
and (EMB_NPY_PATH.exists() or not USE_DENSE))
|
| 271 |
+
if have_cache:
|
| 272 |
+
vectorizer = joblib.load(TFIDF_VECT_PATH)
|
| 273 |
+
X_tfidf = joblib.load(TFIDF_MAT_PATH)
|
| 274 |
+
meta = pd.read_parquet(RAG_META_PATH)
|
| 275 |
+
bm25_toks = joblib.load(BM25_TOK_PATH) if BM25Okapi is not None else None
|
| 276 |
+
emb = np.load(EMB_NPY_PATH) if (USE_DENSE and EMB_NPY_PATH.exists()) else None
|
| 277 |
+
return vectorizer, X_tfidf, meta, bm25_toks, emb
|
| 278 |
+
|
| 279 |
+
rows, all_tokens = [], []
|
| 280 |
+
pdf_paths = list(Path(pdf_dir).glob("**/*.pdf"))
|
| 281 |
+
print(f"Indexing PDFs in {pdf_dir} — found {len(pdf_paths)} files.")
|
| 282 |
+
for pdf in pdf_paths:
|
| 283 |
+
raw = _extract_pdf_text(pdf)
|
| 284 |
+
if not raw.strip():
|
| 285 |
+
continue
|
| 286 |
+
for i, ch in enumerate(chunk_by_sentence_windows(raw, win_size=8, overlap=2)):
|
| 287 |
+
rows.append({"doc_path": str(pdf), "chunk_id": i, "text": ch})
|
| 288 |
+
all_tokens.append(tokenize(ch))
|
| 289 |
+
if not rows:
|
| 290 |
+
# create empty stub to avoid crashes; UI will message user to upload PDFs
|
| 291 |
+
meta = pd.DataFrame(columns=["doc_path", "chunk_id", "text"])
|
| 292 |
+
vectorizer = None; X_tfidf = None; emb = None; all_tokens = None
|
| 293 |
+
return vectorizer, X_tfidf, meta, all_tokens, emb
|
| 294 |
+
|
| 295 |
+
meta = pd.DataFrame(rows)
|
| 296 |
+
|
| 297 |
+
from sklearn.feature_extraction.text import TfidfVectorizer
|
| 298 |
+
vectorizer = TfidfVectorizer(
|
| 299 |
+
ngram_range=(1,2),
|
| 300 |
+
min_df=1, max_df=0.95,
|
| 301 |
+
sublinear_tf=True, smooth_idf=True,
|
| 302 |
+
lowercase=True,
|
| 303 |
+
token_pattern=r"(?u)\b\w[\w\-\./%+#]*\b"
|
| 304 |
+
)
|
| 305 |
+
X_tfidf = vectorizer.fit_transform(meta["text"].tolist())
|
| 306 |
+
|
| 307 |
+
emb = None
|
| 308 |
+
if USE_DENSE:
|
| 309 |
+
try:
|
| 310 |
+
st_model = _safe_init_st_model(os.getenv("EMB_MODEL_NAME", "sentence-transformers/all-MiniLM-L6-v2"))
|
| 311 |
+
if st_model is not None:
|
| 312 |
+
from sklearn.preprocessing import normalize as sk_normalize
|
| 313 |
+
em = st_model.encode(meta["text"].tolist(), batch_size=64, show_progress_bar=False, convert_to_numpy=True)
|
| 314 |
+
emb = sk_normalize(em)
|
| 315 |
+
np.save(EMB_NPY_PATH, emb)
|
| 316 |
+
except Exception as e:
|
| 317 |
+
print("Dense embedding failed:", e)
|
| 318 |
+
emb = None
|
| 319 |
+
|
| 320 |
+
# Save artifacts
|
| 321 |
+
joblib.dump(vectorizer, TFIDF_VECT_PATH)
|
| 322 |
+
joblib.dump(X_tfidf, TFIDF_MAT_PATH)
|
| 323 |
+
if BM25Okapi is not None:
|
| 324 |
+
joblib.dump(all_tokens, BM25_TOK_PATH)
|
| 325 |
+
meta.to_parquet(RAG_META_PATH, index=False)
|
| 326 |
+
|
| 327 |
+
return vectorizer, X_tfidf, meta, all_tokens, emb
|
| 328 |
+
|
| 329 |
+
tfidf_vectorizer, tfidf_matrix, rag_meta, bm25_tokens, emb_matrix = build_or_load_hybrid(LOCAL_PDF_DIR)
|
| 330 |
+
bm25 = BM25Okapi(bm25_tokens) if (BM25Okapi is not None and bm25_tokens is not None) else None
|
| 331 |
+
st_query_model = _safe_init_st_model(os.getenv("EMB_MODEL_NAME", "sentence-transformers/all-MiniLM-L6-v2"))
|
| 332 |
+
|
| 333 |
+
def _extract_page(text_chunk: str) -> str:
|
| 334 |
+
m = list(re.finditer(r"\[\[PAGE=(\d+)\]\]", text_chunk or ""))
|
| 335 |
+
return (m[-1].group(1) if m else "?")
|
| 336 |
+
|
| 337 |
+
def hybrid_search(query: str, k=8, w_tfidf=W_TFIDF_DEFAULT, w_bm25=W_BM25_DEFAULT, w_emb=W_EMB_DEFAULT):
|
| 338 |
+
if rag_meta is None or rag_meta.empty:
|
| 339 |
+
return pd.DataFrame()
|
| 340 |
+
|
| 341 |
+
# Dense scores
|
| 342 |
+
if USE_DENSE and st_query_model is not None and emb_matrix is not None and w_emb > 0:
|
| 343 |
+
try:
|
| 344 |
+
from sklearn.preprocessing import normalize as sk_normalize
|
| 345 |
+
q_emb = st_query_model.encode([query], convert_to_numpy=True)
|
| 346 |
+
q_emb = sk_normalize(q_emb)[0]
|
| 347 |
+
dense_scores = emb_matrix @ q_emb
|
| 348 |
+
except Exception as e:
|
| 349 |
+
print("Dense query encoding failed:", e)
|
| 350 |
+
dense_scores = np.zeros(len(rag_meta), dtype=float); w_emb = 0.0
|
| 351 |
+
else:
|
| 352 |
+
dense_scores = np.zeros(len(rag_meta), dtype=float); w_emb = 0.0
|
| 353 |
+
|
| 354 |
+
# TF-IDF scores
|
| 355 |
+
if tfidf_vectorizer is not None and tfidf_matrix is not None:
|
| 356 |
+
q_vec = tfidf_vectorizer.transform([query])
|
| 357 |
+
tfidf_scores = (tfidf_matrix @ q_vec.T).toarray().ravel()
|
| 358 |
+
else:
|
| 359 |
+
tfidf_scores = np.zeros(len(rag_meta), dtype=float); w_tfidf = 0.0
|
| 360 |
+
|
| 361 |
+
# BM25 scores
|
| 362 |
+
if bm25 is not None:
|
| 363 |
+
q_tokens = [t.lower() for t in re.findall(r"[A-Za-z0-9_#+\-/\.%]+", query)]
|
| 364 |
+
bm25_scores = np.array(bm25.get_scores(q_tokens), dtype=float)
|
| 365 |
+
else:
|
| 366 |
+
bm25_scores = np.zeros(len(rag_meta), dtype=float); w_bm25 = 0.0
|
| 367 |
+
|
| 368 |
+
def _norm(x):
|
| 369 |
+
x = np.asarray(x, dtype=float)
|
| 370 |
+
if np.allclose(x.max(), x.min()):
|
| 371 |
+
return np.zeros_like(x)
|
| 372 |
+
return (x - x.min()) / (x.max() - x.min())
|
| 373 |
+
|
| 374 |
+
s_dense = _norm(dense_scores)
|
| 375 |
+
s_tfidf = _norm(tfidf_scores)
|
| 376 |
+
s_bm25 = _norm(bm25_scores)
|
| 377 |
+
|
| 378 |
+
total_w = (w_tfidf + w_bm25 + w_emb) or 1.0
|
| 379 |
+
w_tfidf, w_bm25, w_emb = w_tfidf/total_w, w_bm25/total_w, w_emb/total_w
|
| 380 |
+
|
| 381 |
+
combo = w_emb * s_dense + w_tfidf * s_tfidf + w_bm25 * s_bm25
|
| 382 |
+
idx = np.argsort(-combo)[:k]
|
| 383 |
+
hits = rag_meta.iloc[idx].copy()
|
| 384 |
+
hits["score_dense"] = s_dense[idx]
|
| 385 |
+
hits["score_tfidf"] = s_tfidf[idx]
|
| 386 |
+
hits["score_bm25"] = s_bm25[idx]
|
| 387 |
+
hits["score"] = combo[idx]
|
| 388 |
+
return hits.reset_index(drop=True)
|
| 389 |
+
|
| 390 |
+
def split_sentences(text: str) -> List[str]:
|
| 391 |
+
sents = sent_split(text)
|
| 392 |
+
return [s for s in sents if 6 <= len(s.split()) <= 60]
|
| 393 |
+
|
| 394 |
+
def mmr_select_sentences(question: str, hits: pd.DataFrame, top_n=4, pool_per_chunk=6, lambda_div=0.7):
|
| 395 |
+
pool = []
|
| 396 |
+
for _, row in hits.iterrows():
|
| 397 |
+
doc = Path(row["doc_path"]).name
|
| 398 |
+
page = _extract_page(row["text"])
|
| 399 |
+
for s in split_sentences(row["text"])[:pool_per_chunk]:
|
| 400 |
+
pool.append({"sent": s, "doc": doc, "page": page})
|
| 401 |
+
if not pool:
|
| 402 |
+
return []
|
| 403 |
+
|
| 404 |
+
sent_texts = [p["sent"] for p in pool]
|
| 405 |
+
|
| 406 |
+
# Embedding-based relevance if available, else TF-IDF
|
| 407 |
+
use_dense = USE_DENSE and st_query_model is not None
|
| 408 |
+
if use_dense:
|
| 409 |
+
try:
|
| 410 |
+
from sklearn.preprocessing import normalize as sk_normalize
|
| 411 |
+
texts = [question] + sent_texts
|
| 412 |
+
enc = st_query_model.encode(texts, convert_to_numpy=True)
|
| 413 |
+
q_vec = sk_normalize(enc[:1])[0]
|
| 414 |
+
S = sk_normalize(enc[1:])
|
| 415 |
+
rel = (S @ q_vec)
|
| 416 |
+
def sim_fn(i, j): return float(S[i] @ S[j])
|
| 417 |
+
except Exception:
|
| 418 |
+
use_dense = False
|
| 419 |
+
|
| 420 |
+
if not use_dense:
|
| 421 |
+
from sklearn.feature_extraction.text import TfidfVectorizer
|
| 422 |
+
vect = TfidfVectorizer().fit(sent_texts + [question])
|
| 423 |
+
Q = vect.transform([question]); S = vect.transform(sent_texts)
|
| 424 |
+
rel = (S @ Q.T).toarray().ravel()
|
| 425 |
+
def sim_fn(i, j): return float((S[i] @ S[j].T).toarray()[0, 0])
|
| 426 |
+
|
| 427 |
+
selected, selected_idx = [], []
|
| 428 |
+
remain = list(range(len(pool)))
|
| 429 |
+
first = int(np.argmax(rel))
|
| 430 |
+
selected.append(pool[first]); selected_idx.append(first); remain.remove(first)
|
| 431 |
+
|
| 432 |
+
while len(selected) < top_n and remain:
|
| 433 |
+
cand_scores = []
|
| 434 |
+
for i in remain:
|
| 435 |
+
sim_to_sel = max(sim_fn(i, j) for j in selected_idx) if selected_idx else 0.0
|
| 436 |
+
score = lambda_div * rel[i] - (1 - lambda_div) * sim_to_sel
|
| 437 |
+
cand_scores.append((score, i))
|
| 438 |
+
cand_scores.sort(reverse=True)
|
| 439 |
+
best_i = cand_scores[0][1]
|
| 440 |
+
selected.append(pool[best_i]); selected_idx.append(best_i); remain.remove(best_i)
|
| 441 |
+
return selected
|
| 442 |
+
|
| 443 |
+
def compose_extractive(selected: List[Dict[str, Any]]) -> str:
|
| 444 |
+
if not selected:
|
| 445 |
+
return ""
|
| 446 |
+
return " ".join(f"{s['sent']} ({s['doc']}, p.{s['page']})" for s in selected)
|
| 447 |
+
|
| 448 |
+
def synthesize_with_llm(question: str, sentence_lines: List[str], model: str = None, temperature: float = 0.2) -> str:
|
| 449 |
+
if OPENAI_API_KEY is None or OpenAI is None:
|
| 450 |
+
return None
|
| 451 |
+
client = OpenAI(api_key=OPENAI_API_KEY)
|
| 452 |
+
model = model or OPENAI_MODEL
|
| 453 |
+
SYSTEM_PROMPT = (
|
| 454 |
+
"You are a scientific assistant for self-sensing cementitious materials.\n"
|
| 455 |
+
"Answer STRICTLY using the provided sentences.\n"
|
| 456 |
+
"Do not invent facts. Keep it concise (3–6 sentences).\n"
|
| 457 |
+
"Retain inline citations like (Doc.pdf, p.X) exactly as given."
|
| 458 |
+
)
|
| 459 |
+
user_prompt = (
|
| 460 |
+
f"Question: {question}\n\n"
|
| 461 |
+
f"Use ONLY these sentences to answer; keep their inline citations:\n" +
|
| 462 |
+
"\n".join(f"- {s}" for s in sentence_lines)
|
| 463 |
+
)
|
| 464 |
+
try:
|
| 465 |
+
resp = client.responses.create(
|
| 466 |
+
model=model,
|
| 467 |
+
input=[
|
| 468 |
+
{"role": "system", "content": SYSTEM_PROMPT},
|
| 469 |
+
{"role": "user", "content": user_prompt},
|
| 470 |
+
],
|
| 471 |
+
temperature=temperature,
|
| 472 |
+
)
|
| 473 |
+
return getattr(resp, "output_text", None) or str(resp)
|
| 474 |
+
except Exception:
|
| 475 |
+
return None
|
| 476 |
+
|
| 477 |
+
def rag_reply(
|
| 478 |
+
question: str,
|
| 479 |
+
k: int = 8,
|
| 480 |
+
n_sentences: int = 4,
|
| 481 |
+
include_passages: bool = False,
|
| 482 |
+
use_llm: bool = False,
|
| 483 |
+
model: str = None,
|
| 484 |
+
temperature: float = 0.2,
|
| 485 |
+
strict_quotes_only: bool = False,
|
| 486 |
+
w_tfidf: float = W_TFIDF_DEFAULT,
|
| 487 |
+
w_bm25: float = W_BM25_DEFAULT,
|
| 488 |
+
w_emb: float = W_EMB_DEFAULT
|
| 489 |
+
) -> str:
|
| 490 |
+
hits = hybrid_search(question, k=k, w_tfidf=w_tfidf, w_bm25=w_bm25, w_emb=w_emb)
|
| 491 |
+
if hits is None or hits.empty:
|
| 492 |
+
return "No indexed PDFs found. Upload PDFs to the 'papers/' folder and reload the Space."
|
| 493 |
+
|
| 494 |
+
selected = mmr_select_sentences(question, hits, top_n=int(n_sentences), pool_per_chunk=6, lambda_div=0.7)
|
| 495 |
+
header_cites = "; ".join(f"{Path(r['doc_path']).name} (p.{_extract_page(r['text'])})" for _, r in hits.head(6).iterrows())
|
| 496 |
+
srcs = {Path(r['doc_path']).name for _, r in hits.iterrows()}
|
| 497 |
+
coverage_note = "" if len(srcs) >= 3 else f"\n\n> Note: Only {len(srcs)} unique source(s) contributed. Add more PDFs or increase Top-K."
|
| 498 |
+
|
| 499 |
+
if strict_quotes_only:
|
| 500 |
+
if not selected:
|
| 501 |
+
return f"**Quoted Passages:**\n\n---\n" + "\n\n".join(hits['text'].tolist()[:2]) + f"\n\n**Citations:** {header_cites}{coverage_note}"
|
| 502 |
+
msg = "**Quoted Passages:**\n- " + "\n- ".join(f"{s['sent']} ({s['doc']}, p.{s['page']})" for s in selected)
|
| 503 |
+
msg += f"\n\n**Citations:** {header_cites}{coverage_note}"
|
| 504 |
+
if include_passages:
|
| 505 |
+
msg += "\n\n---\n" + "\n\n".join(hits['text'].tolist()[:2])
|
| 506 |
+
return msg
|
| 507 |
+
|
| 508 |
+
extractive = compose_extractive(selected)
|
| 509 |
+
if use_llm and selected:
|
| 510 |
+
lines = [f"{s['sent']} ({s['doc']}, p.{s['page']})" for s in selected]
|
| 511 |
+
llm_text = synthesize_with_llm(question, lines, model=model, temperature=temperature)
|
| 512 |
+
if llm_text:
|
| 513 |
+
msg = f"**Answer (LLM synthesis):** {llm_text}\n\n**Citations:** {header_cites}{coverage_note}"
|
| 514 |
+
if include_passages:
|
| 515 |
+
msg += "\n\n---\n" + "\n\n".join(hits['text'].tolist()[:2])
|
| 516 |
+
return msg
|
| 517 |
+
|
| 518 |
+
if not extractive:
|
| 519 |
+
return f"**Answer:** Here are relevant passages.\n\n**Citations:** {header_cites}{coverage_note}\n\n---\n" + "\n\n".join(hits['text'].tolist()[:2])
|
| 520 |
+
|
| 521 |
+
msg = f"**Answer:** {extractive}\n\n**Citations:** {header_cites}{coverage_note}"
|
| 522 |
+
if include_passages:
|
| 523 |
+
msg += "\n\n---\n" + "\n\n".join(hits['text'].tolist()[:2])
|
| 524 |
+
return msg
|
| 525 |
+
|
| 526 |
+
def rag_chat_fn(message, history, top_k, n_sentences, include_passages,
|
| 527 |
+
use_llm, model_name, temperature, strict_quotes_only,
|
| 528 |
+
w_tfidf, w_bm25, w_emb):
|
| 529 |
+
if not message or not message.strip():
|
| 530 |
+
return "Ask a literature question (e.g., *How does CNT length affect gauge factor?*)"
|
| 531 |
+
try:
|
| 532 |
+
return rag_reply(
|
| 533 |
+
question=message,
|
| 534 |
+
k=int(top_k),
|
| 535 |
+
n_sentences=int(n_sentences),
|
| 536 |
+
include_passages=bool(include_passages),
|
| 537 |
+
use_llm=bool(use_llm),
|
| 538 |
+
model=(model_name or None),
|
| 539 |
+
temperature=float(temperature),
|
| 540 |
+
strict_quotes_only=bool(strict_quotes_only),
|
| 541 |
+
w_tfidf=float(w_tfidf),
|
| 542 |
+
w_bm25=float(w_bm25),
|
| 543 |
+
w_emb=float(w_emb),
|
| 544 |
+
)
|
| 545 |
+
except Exception as e:
|
| 546 |
+
return f"RAG error: {e}"
|
| 547 |
+
|
| 548 |
+
# ========================= UI (predictor styling kept) =========================
|
| 549 |
+
CSS = """
|
| 550 |
+
/* Blue to green gradient background */
|
| 551 |
+
.gradio-container {
|
| 552 |
+
background: linear-gradient(135deg, #1e3a8a 0%, #166534 60%, #15803d 100%) !important;
|
| 553 |
}
|
| 554 |
+
* {font-family: ui-sans-serif, system-ui, -apple-system, 'Segoe UI', Roboto, 'Helvetica Neue', Arial;}
|
| 555 |
+
.card {background: rgba(255,255,255,0.07) !important; border: 1px solid rgba(255,255,255,0.12);}
|
| 556 |
+
label.svelte-1ipelgc {color: #e0f2fe !important;}
|
| 557 |
"""
|
| 558 |
|
|
|
|
| 559 |
theme = gr.themes.Soft(
|
| 560 |
primary_hue="blue",
|
| 561 |
+
neutral_hue="green"
|
|
|
|
| 562 |
).set(
|
| 563 |
+
body_background_fill="#1e3a8a",
|
| 564 |
+
body_text_color="#e0f2fe",
|
| 565 |
+
input_background_fill="#172554",
|
| 566 |
+
input_border_color="#1e40af",
|
| 567 |
+
button_primary_background_fill="#2563eb",
|
| 568 |
button_primary_text_color="#ffffff",
|
| 569 |
+
button_secondary_background_fill="#14532d",
|
| 570 |
+
button_secondary_text_color="#ecfdf5",
|
|
|
|
|
|
|
| 571 |
)
|
| 572 |
+
|
| 573 |
+
with gr.Blocks(css=CSS, theme=theme, fill_height=True) as demo:
|
| 574 |
+
gr.Markdown(
|
| 575 |
+
"<h1 style='margin:0'>Self-Sensing Concrete Assistant</h1>"
|
| 576 |
+
"<p style='opacity:.9'>"
|
| 577 |
+
"Left tab: ML prediction for Stress Gauge Factor (kept identical to your deployed predictor). "
|
| 578 |
+
"Right tab: Literature Q&A via Hybrid RAG (BM25 + TF-IDF + optional dense) with MMR sentence selection. "
|
| 579 |
+
"Upload PDFs into <code>papers/</code> in your Space repo."
|
| 580 |
+
"</p>"
|
| 581 |
+
)
|
| 582 |
+
|
| 583 |
+
with gr.Tabs():
|
| 584 |
+
# ------------------------- Predictor Tab -------------------------
|
| 585 |
+
with gr.Tab("🔮 Predict Gauge Factor (XGB)"):
|
| 586 |
+
with gr.Row():
|
| 587 |
+
with gr.Column(scale=7):
|
| 588 |
+
with gr.Accordion("Primary conductive filler", open=True, elem_classes=["card"]):
|
| 589 |
+
f1_type = gr.Textbox(label="Filler 1 Type", placeholder="e.g., CNT, Graphite, Steel fiber")
|
| 590 |
+
f1_diam = gr.Number(label="Filler 1 Diameter (µm)")
|
| 591 |
+
f1_len = gr.Number(label="Filler 1 Length (mm)")
|
| 592 |
+
cf_conc = gr.Number(label=f"{CF_COL}", info="Weight percent of total binder")
|
| 593 |
+
f1_dim = gr.Dropdown(DIM_CHOICES, value="NA", label="Filler 1 Dimensionality")
|
| 594 |
+
|
| 595 |
+
with gr.Accordion("Secondary filler (optional)", open=False, elem_classes=["card"]):
|
| 596 |
+
f2_type = gr.Textbox(label="Filler 2 Type", placeholder="Optional")
|
| 597 |
+
f2_diam = gr.Number(label="Filler 2 Diameter (µm)")
|
| 598 |
+
f2_len = gr.Number(label="Filler 2 Length (mm)")
|
| 599 |
+
f2_dim = gr.Dropdown(DIM_CHOICES, value="NA", label="Filler 2 Dimensionality")
|
| 600 |
+
|
| 601 |
+
with gr.Accordion("Mix design & specimen", open=False, elem_classes=["card"]):
|
| 602 |
+
spec_vol = gr.Number(label="Specimen Volume (mm3)")
|
| 603 |
+
probe_cnt = gr.Number(label="Probe Count")
|
| 604 |
+
probe_mat = gr.Textbox(label="Probe Material", placeholder="e.g., Copper, Silver paste")
|
| 605 |
+
wb = gr.Number(label="W/B")
|
| 606 |
+
sb = gr.Number(label="S/B")
|
| 607 |
+
gauge_len = gr.Number(label="Gauge Length (mm)")
|
| 608 |
+
curing = gr.Textbox(label="Curing Condition", placeholder="e.g., 28d water, 20°C")
|
| 609 |
+
n_fillers = gr.Number(label="Number of Fillers")
|
| 610 |
+
|
| 611 |
+
with gr.Accordion("Processing", open=False, elem_classes=["card"]):
|
| 612 |
+
dry_temp = gr.Number(label="Drying Temperature (°C)")
|
| 613 |
+
dry_hrs = gr.Number(label="Drying Duration (hr)")
|
| 614 |
+
|
| 615 |
+
with gr.Accordion("Mechanical & electrical loading", open=False, elem_classes=["card"]):
|
| 616 |
+
load_rate = gr.Number(label="Loading Rate (MPa/s)")
|
| 617 |
+
E_mod = gr.Number(label="Modulus of Elasticity (GPa)")
|
| 618 |
+
current = gr.Dropdown(CURRENT_CHOICES, value="NA", label="Current Type")
|
| 619 |
+
voltage = gr.Number(label="Applied Voltage (V)")
|
| 620 |
+
|
| 621 |
+
with gr.Column(scale=5):
|
| 622 |
+
with gr.Group(elem_classes=["card"]):
|
| 623 |
+
out_pred = gr.Number(label="Predicted Stress GF (MPa-1)", precision=6)
|
| 624 |
+
with gr.Row():
|
| 625 |
+
btn_pred = gr.Button("Predict", variant="primary")
|
| 626 |
+
btn_clear = gr.Button("Clear")
|
| 627 |
+
btn_demo = gr.Button("Fill Example")
|
| 628 |
+
|
| 629 |
+
with gr.Accordion("About this model", open=False, elem_classes=["card"]):
|
| 630 |
+
gr.Markdown(
|
| 631 |
+
"- Pipeline: ColumnTransformer -> (RobustScaler + OneHot) -> XGBoost\n"
|
| 632 |
+
"- Target: Stress GF (MPa^-1) on original scale (model trains on log1p).\n"
|
| 633 |
+
"- Missing values are safely imputed per-feature.\n"
|
| 634 |
+
"- Trained columns:\n"
|
| 635 |
+
f" `{', '.join(MAIN_VARIABLES)}`"
|
| 636 |
+
)
|
| 637 |
+
|
| 638 |
+
# Wire predictor buttons
|
| 639 |
+
inputs_in_order = [
|
| 640 |
+
f1_type, f1_diam, f1_len, cf_conc,
|
| 641 |
+
f1_dim, f2_type, f2_diam, f2_len,
|
| 642 |
+
f2_dim, spec_vol, probe_cnt, probe_mat,
|
| 643 |
+
wb, sb, gauge_len, curing, n_fillers,
|
| 644 |
+
dry_temp, dry_hrs, load_rate,
|
| 645 |
+
E_mod, current, voltage
|
| 646 |
+
]
|
| 647 |
+
|
| 648 |
+
def _predict_wrapper(*vals):
|
| 649 |
+
data = {k: v for k, v in zip(MAIN_VARIABLES, vals)}
|
| 650 |
+
return predict_fn(**data)
|
| 651 |
+
|
| 652 |
+
btn_pred.click(_predict_wrapper, inputs=inputs_in_order, outputs=out_pred)
|
| 653 |
+
btn_clear.click(lambda: _clear_all(), inputs=None, outputs=inputs_in_order)
|
| 654 |
+
btn_demo.click(lambda: _fill_example(), inputs=None, outputs=inputs_in_order)
|
| 655 |
+
|
| 656 |
+
# ------------------------- Literature Tab -------------------------
|
| 657 |
+
with gr.Tab("📚 Ask the Literature (Hybrid RAG + MMR)"):
|
| 658 |
+
gr.Markdown(
|
| 659 |
+
"Upload PDFs into the repository folder <code>papers/</code> then reload the Space. "
|
| 660 |
+
"Answers cite (Doc.pdf, p.X). Toggle strict quotes or optional LLM paraphrasing."
|
| 661 |
+
)
|
| 662 |
+
with gr.Row():
|
| 663 |
+
top_k = gr.Slider(5, 12, value=8, step=1, label="Top-K chunks")
|
| 664 |
+
n_sentences = gr.Slider(2, 6, value=4, step=1, label="Answer length (sentences)")
|
| 665 |
+
include_passages = gr.Checkbox(value=False, label="Include supporting passages")
|
| 666 |
+
with gr.Accordion("Retriever weights (advanced)", open=False):
|
| 667 |
+
w_tfidf = gr.Slider(0.0, 1.0, value=W_TFIDF_DEFAULT, step=0.05, label="TF-IDF weight")
|
| 668 |
+
w_bm25 = gr.Slider(0.0, 1.0, value=W_BM25_DEFAULT, step=0.05, label="BM25 weight")
|
| 669 |
+
w_emb = gr.Slider(0.0, 1.0, value=W_EMB_DEFAULT, step=0.05, label="Dense weight (set 0 if disabled)")
|
| 670 |
+
with gr.Accordion("LLM & Controls", open=False):
|
| 671 |
+
strict_quotes_only = gr.Checkbox(value=False, label="Strict quotes only (no paraphrasing)")
|
| 672 |
+
use_llm = gr.Checkbox(value=False, label="Use LLM to paraphrase selected sentences")
|
| 673 |
+
model_name = gr.Textbox(value=os.getenv("OPENAI_MODEL", OPENAI_MODEL),
|
| 674 |
+
label="LLM model", placeholder="e.g., gpt-5 or gpt-5-mini")
|
| 675 |
+
temperature = gr.Slider(0.0, 1.0, value=0.2, step=0.05, label="Temperature")
|
| 676 |
+
gr.ChatInterface(
|
| 677 |
+
fn=rag_chat_fn,
|
| 678 |
+
additional_inputs=[top_k, n_sentences, include_passages, use_llm, model_name,
|
| 679 |
+
temperature, strict_quotes_only, w_tfidf, w_bm25, w_emb],
|
| 680 |
+
title="Literature Q&A",
|
| 681 |
+
description="Hybrid retrieval with diversity. Answers carry inline (Doc, p.X) citations. Toggle strict/LLM modes."
|
| 682 |
+
)
|
| 683 |
+
|
| 684 |
+
# ------------- Launch -------------
|
| 685 |
+
if __name__ == "__main__":
|
| 686 |
+
# queue() helps HF Spaces with concurrency; show_error suggests upload PDFs if none
|
| 687 |
+
demo.queue().launch()
|