candle-fire / data /seeds /manual_seeds.json
KevinIsInCoding
feat: automate ALS seed entities from trials and paper corpus
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{
"genes": [
"SOD1", "TARDBP", "FUS", "C9orf72", "ATXN2",
"TBK1", "OPTN", "UBQLN2", "VCP", "NEK1",
"ANG", "SETX", "SIGMAR1", "CHCHD10", "MATR3"
],
"proteins": [
"TDP-43", "FUS protein", "SOD1 protein", "Alsin",
"Optineurin", "p62", "Ubiquilin-2"
],
"compounds": [
"riluzole", "edaravone", "tofersen", "AMX0035",
"mexiletine", "masitinib", "bosutinib"
],
"mechanisms": [
"glutamate excitotoxicity", "oxidative stress",
"neuroinflammation", "protein aggregation",
"RNA metabolism dysfunction", "mitochondrial dysfunction",
"axonal transport defect", "autophagy impairment"
],
"phenotypes": [
"upper motor neuron degeneration", "lower motor neuron degeneration",
"bulbar onset ALS", "spinal onset ALS",
"frontotemporal dementia", "respiratory failure"
]
}