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9895fb8
cpr
174 MB
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8 contributors
History:
260 commits
LoocasGoose
Claude Opus 4.5
Merge upstream/main into gradio - bring in all core improvements
9895fb8
3 months ago
afdb
new clean branch
5 months ago
clean_selection
Merge upstream/main into gradio - bring in all core improvements
3 months ago
data
Merge upstream/main into gradio - bring in all core improvements
3 months ago
docs
docs: consolidate documentation and add working patterns
3 months ago
ec
new clean branch
5 months ago
notebooks
chore: clean up redundant scripts and consolidate thresholds
3 months ago
pfam
new clean branch
5 months ago
protein_conformal
Merge upstream/main into gradio - bring in all core improvements
3 months ago
results
Merge upstream/main into gradio - bring in all core improvements
3 months ago
scripts
Merge upstream/main into gradio - bring in all core improvements
3 months ago
tests
fix: update CLI tests for --input flag and --no-filter
3 months ago
.dockerignore
18 Bytes
created dockerfile and dockerignore
9 months ago
.gitattributes
Safe
392 Bytes
new clean branch
5 months ago
.gitignore
4.01 kB
docs: consolidate documentation and add working patterns
3 months ago
CLAUDE.md
6.35 kB
docs: add development workflow patterns to CLAUDE.md
3 months ago
DATA.md
4.96 kB
docs: add Protein-Vec model weights Zenodo link with wget commands
3 months ago
DEVELOPMENT.md
4.89 kB
docs: consolidate documentation and add working patterns
3 months ago
Dockerfile
Safe
1.46 kB
refactor: cleanup repo, add SLURM scripts, document reproducibility
3 months ago
GETTING_STARTED.md
14.9 kB
docs: add CLEAN setup details and Docker/Apptainer usage
3 months ago
LICENSE
Safe
11.4 kB
new clean branch
5 months ago
README.md
Safe
9.45 kB
docs: add Protein-Vec model weights Zenodo link with wget commands
3 months ago
REPO_ORGANIZATION.md
7.53 kB
docs: add comprehensive REPO_ORGANIZATION.md
3 months ago
TEST_SUMMARY.md
6.08 kB
feat: add CLEAN embedding support and CLI tests
3 months ago
UPLOAD_CHECKLIST.md
4.82 kB
feat: add one-step cpr find command and FDR-level search
3 months ago
app.py
Safe
5.5 kB
new clean branch
5 months ago
apptainer.def
3.02 kB
docs: improve Apptainer usage instructions
3 months ago
convert_fasta_to_tsv.py
Safe
591 Bytes
new clean branch
5 months ago
docker-compose.yml
540 Bytes
chore: add docker-compose.yml for easier deployment
3 months ago
environment.yml
Safe
1.73 kB
Merge upstream/main into gradio - bring in all core improvements
3 months ago
pyproject.toml
2.44 kB
refactor: cleanup repo, add SLURM scripts, document reproducibility
3 months ago
requirements.txt
Safe
628 Bytes
Merge upstream/main into gradio - bring in all core improvements
3 months ago
setup.py
128 Bytes
feat: add CLI, fix FDR bug, verify paper result (59/149 = 39.6%)
3 months ago
