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e1c703d
cpr
238 MB
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8 contributors
History:
222 commits
ronboger
Claude Opus 4.5
fix: use correct calibration dataset (pfam_new_proteins.npy)
e1c703d
3 months ago
afdb
cleanup before open source
almost 2 years ago
clean_selection
Merge gradio-ron branch: add Gradio UI, reorganize notebooks
4 months ago
data
bunch of renaming and refactoring
8 months ago
docs
docs: update verification notes with FDR calibration results
3 months ago
notebooks
Merge gradio-ron branch: add Gradio UI, reorganize notebooks
4 months ago
protein_conformal
feat: add Docker/Apptainer support and FDR investigation tools
3 months ago
results
second attempt at fdr/fnr generating script
9 months ago
scope
Merge gradio-ron branch: add Gradio UI, reorganize notebooks
4 months ago
scripts
fix: use correct calibration dataset (pfam_new_proteins.npy)
3 months ago
tests
feat: add CLI, fix FDR bug, verify paper result (59/149 = 39.6%)
3 months ago
.dockerignore
18 Bytes
created dockerfile and dockerignore
9 months ago
.gitattributes
170 Bytes
Initial commit
about 2 years ago
.gitignore
3.69 kB
feat: add CLI, fix FDR bug, verify paper result (59/149 = 39.6%)
3 months ago
CLAUDE.md
8.57 kB
fix: use correct calibration dataset (pfam_new_proteins.npy)
3 months ago
DATA.md
4.39 kB
feat: add CLI, fix FDR bug, verify paper result (59/149 = 39.6%)
3 months ago
DEVELOPMENT.md
7.92 kB
fix: use correct calibration dataset (pfam_new_proteins.npy)
3 months ago
LICENSE
Safe
11.4 kB
Update LICENSE
almost 2 years ago
README.md
Safe
6.54 kB
update paper link
over 1 year ago
REPO_ORGANIZATION.md
7.53 kB
docs: add comprehensive REPO_ORGANIZATION.md
3 months ago
apptainer.def
1.83 kB
feat: add Docker/Apptainer support and FDR investigation tools
3 months ago
docker-compose.yml
540 Bytes
chore: add docker-compose.yml for easier deployment
3 months ago
dockerfile
1.5 kB
edited dockerfiles
9 months ago
environment.yml
1.62 kB
edited dockerfiles
9 months ago
pyproject.toml
2.37 kB
feat: add test infrastructure, docs, and modern packaging
3 months ago
requirements.txt
500 Bytes
first attempt at gradio website. basic functionalities for UI/UX present
about 1 year ago
setup.py
128 Bytes
feat: add CLI, fix FDR bug, verify paper result (59/149 = 39.6%)
3 months ago
