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ab204cc | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 | """Real-time brain prediction engine.
Runs in a background thread, consuming frames from a capture source,
extracting features, and producing brain predictions via TRIBE v2.
When CortexLab is not installed, falls back to a simulation mode that
generates synthetic predictions from frame statistics.
"""
from __future__ import annotations
import time
import threading
import logging
from collections import deque
from dataclasses import dataclass, field
import numpy as np
from live_capture import BaseCapture, MediaFrame
logger = logging.getLogger(__name__)
# Check if CortexLab is available
try:
from cortexlab.inference.predictor import TribeModel
CORTEXLAB_AVAILABLE = True
except ImportError:
CORTEXLAB_AVAILABLE = False
@dataclass
class LivePrediction:
"""A single prediction with metadata."""
vertex_data: np.ndarray # (n_vertices,)
timestamp: float
cognitive_load: dict[str, float] = field(default_factory=dict)
processing_time_ms: float = 0.0
@dataclass
class LiveMetrics:
"""Aggregated metrics from the live engine."""
fps: float = 0.0
total_frames: int = 0
total_predictions: int = 0
avg_latency_ms: float = 0.0
is_running: bool = False
mode: str = "simulation" # "simulation" or "cortexlab"
class LiveInferenceEngine:
"""Background engine for real-time brain prediction.
Consumes frames from a capture source and produces brain predictions.
If CortexLab is installed and a GPU is available, uses the real TRIBE v2
model. Otherwise, falls back to simulation mode that generates plausible
predictions from frame statistics.
"""
def __init__(
self,
n_vertices: int = 580,
roi_indices: dict | None = None,
buffer_size: int = 120,
checkpoint: str = "facebook/tribev2",
device: str = "auto",
cache_folder: str = "./cache",
):
self.n_vertices = n_vertices
self.roi_indices = roi_indices or {}
self.buffer_size = buffer_size
self.checkpoint = checkpoint
self.device = device
self.cache_folder = cache_folder
self._predictions: deque[LivePrediction] = deque(maxlen=buffer_size)
self._running = False
self._thread: threading.Thread | None = None
self._lock = threading.Lock()
self._model = None
self._metrics = LiveMetrics()
self._capture: BaseCapture | None = None
def start(self, capture: BaseCapture):
"""Start the inference engine with a media capture source."""
if self._running:
return
self._capture = capture
self._running = True
self._metrics = LiveMetrics(is_running=True)
# Try to load CortexLab model
if CORTEXLAB_AVAILABLE:
try:
logger.info("Loading TRIBE v2 model...")
self._model = TribeModel.from_pretrained(
self.checkpoint, device=self.device, cache_folder=self.cache_folder
)
self._metrics.mode = "cortexlab"
logger.info("Model loaded. Using real inference.")
except Exception as e:
logger.warning(f"Failed to load model: {e}. Using simulation mode.")
self._model = None
self._metrics.mode = "simulation"
else:
self._metrics.mode = "simulation"
capture.start()
self._thread = threading.Thread(target=self._inference_loop, daemon=True)
self._thread.start()
def stop(self):
"""Stop the engine and capture source."""
self._running = False
if self._capture:
self._capture.stop()
if self._thread:
self._thread.join(timeout=5.0)
self._metrics.is_running = False
def get_latest_prediction(self) -> LivePrediction | None:
with self._lock:
return self._predictions[-1] if self._predictions else None
def get_predictions(self, n: int = 60) -> list[LivePrediction]:
with self._lock:
return list(self._predictions)[-n:]
def get_metrics(self) -> LiveMetrics:
return self._metrics
def _inference_loop(self):
"""Main loop: consume frames, produce predictions."""
frame_times = deque(maxlen=30)
last_frame_count = 0
while self._running:
frame = self._capture.get_latest_frame()
if frame is None:
time.sleep(0.1)
continue
# Skip if we already processed this frame
current_count = self._capture.frame_count
if current_count == last_frame_count:
time.sleep(0.05)
continue
last_frame_count = current_count
start = time.time()
if self._model is not None and self._metrics.mode == "cortexlab":
prediction = self._run_real_inference(frame)
else:
prediction = self._run_simulation(frame)
elapsed_ms = (time.time() - start) * 1000
prediction.processing_time_ms = elapsed_ms
with self._lock:
self._predictions.append(prediction)
# Update metrics
frame_times.append(time.time())
self._metrics.total_predictions += 1
self._metrics.total_frames = current_count
self._metrics.avg_latency_ms = elapsed_ms
if len(frame_times) >= 2:
self._metrics.fps = (len(frame_times) - 1) / (frame_times[-1] - frame_times[0])
# Check if capture stopped (file ended)
if not self._capture.is_running:
self._running = False
self._metrics.is_running = False
def _run_real_inference(self, frame: MediaFrame) -> LivePrediction:
"""Run actual TRIBE v2 inference on a frame.
For real-time, we skip the full pipeline (get_events_dataframe)
and use a simplified feature extraction path.
"""
import tempfile
import os
try:
# Save frame as temporary video (1 frame)
import cv2
tmp_path = os.path.join(tempfile.gettempdir(), "cortexlab_live_frame.mp4")
h, w = frame.video_frame.shape[:2]
out = cv2.VideoWriter(tmp_path, cv2.VideoWriter_fourcc(*'mp4v'), 1, (w, h))
out.write(cv2.cvtColor(frame.video_frame, cv2.COLOR_RGB2BGR))
out.release()
events = self._model.get_events_dataframe(video_path=tmp_path)
preds, _ = self._model.predict(events, verbose=False)
vertex_data = preds.mean(axis=0) if preds.ndim == 2 else preds
# Normalize to [0, 1]
vmin, vmax = vertex_data.min(), vertex_data.max()
if vmax > vmin:
vertex_data = (vertex_data - vmin) / (vmax - vmin)
os.unlink(tmp_path)
except Exception as e:
logger.warning(f"Inference failed: {e}. Falling back to simulation.")
return self._run_simulation(frame)
cog_load = self._compute_cognitive_load(vertex_data)
return LivePrediction(
vertex_data=vertex_data,
timestamp=frame.timestamp,
cognitive_load=cog_load,
)
def _run_simulation(self, frame: MediaFrame) -> LivePrediction:
"""Generate plausible predictions from frame statistics.
Uses frame brightness/color as proxy for visual complexity,
creating biologically-inspired activation patterns.
"""
rng = np.random.default_rng(int(frame.timestamp * 1000) % (2**31))
# Base noise
vertex_data = rng.standard_normal(self.n_vertices) * 0.03
if frame.video_frame is not None:
img = frame.video_frame.astype(np.float32) / 255.0
# Visual complexity from image statistics
brightness = img.mean()
contrast = img.std()
color_variance = img.var(axis=(0, 1)).mean()
# Map to ROI activations
for roi_name, vertices in self.roi_indices.items():
valid = vertices[vertices < self.n_vertices]
if len(valid) == 0:
continue
# Visual ROIs respond to brightness/contrast
if roi_name in ["V1", "V2", "V3", "V4", "MT", "MST", "FFC", "VVC"]:
activation = contrast * 0.8 + color_variance * 0.5
# Auditory ROIs get low baseline
elif roi_name in ["A1", "LBelt", "MBelt", "PBelt", "A4", "A5"]:
activation = 0.05 + rng.random() * 0.1
# Language ROIs moderate
elif roi_name in ["44", "45", "IFJa", "IFJp", "TPOJ1", "TPOJ2"]:
activation = brightness * 0.3
# Executive ROIs track change
elif roi_name in ["46", "9-46d", "8Av", "8Ad", "FEF"]:
activation = contrast * 0.5
else:
activation = 0.1
vertex_data[valid] = activation + rng.standard_normal(len(valid)) * 0.05
vertex_data = np.clip(vertex_data, 0, 1)
cog_load = self._compute_cognitive_load(vertex_data)
return LivePrediction(
vertex_data=vertex_data,
timestamp=frame.timestamp,
cognitive_load=cog_load,
)
def _compute_cognitive_load(self, vertex_data: np.ndarray) -> dict[str, float]:
"""Compute cognitive load dimensions from vertex data."""
from utils import COGNITIVE_DIMENSIONS
baseline = max(float(np.median(np.abs(vertex_data))), 1e-8)
scores = {}
for dim, rois in COGNITIVE_DIMENSIONS.items():
vals = []
for roi in rois:
if roi in self.roi_indices:
verts = self.roi_indices[roi]
valid = verts[verts < len(vertex_data)]
if len(valid) > 0:
vals.append(np.abs(vertex_data[valid]).mean())
scores[dim] = min(float(np.mean(vals)) / baseline, 1.0) if vals else 0.0
scores["Overall"] = float(np.mean(list(scores.values()))) if scores else 0.0
return scores
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