Update utils.py

utils.py

@@ -456,7 +456,13 @@ def build_multifile_category_df(validNames, results, summaries, categories, cate
 
     for fn in validNames:
         currAnnotation, _ = results[fn]
-        catSummary, extraCats = su.calcCategories(currAnnotation, categorySelect[fn])
+        # categorySelect is now a global token list [[token,...], ...]; extract raw IDs for fn
+        prefix = fn + ": "
+        per_file_selections = [
+            [t[len(prefix):] for t in tokens if t.startswith(prefix)]
+            for tokens in categorySelect
+        ]
+        catSummary, extraCats = su.calcCategories(currAnnotation, per_file_selections)
         summaries[fn]["categories"] = (catSummary, extraCats)
         for extra in extraCats:
             df6_dict.setdefault(extra, [])