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Ting20251112
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model/low_energy/checkpoints/config.yaml
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batch_size: 1000
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epochs: 3500
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eval_every_n_epochs: 5
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smilesmodel_finetune: False
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smilesmodel_finetune_path: "/public/home/hpc212307003/molclr_cnn/nist_w2v/pretrained_gin/checkpoints/model.pth"
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fine_tune_from: "/home/xieting/graph_transformer_esa/runs/dem4_esa_4.5_10/"
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log_every_n_steps: 2
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learning_rate: 1e-05
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weight_decay: 0.0001
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fp16_precision: True
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truncation: True
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model_config:
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num_layer: 5
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emb_dim: 300
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feat_dim: 512
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drop_ratio: 0.3
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pool : mean
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spec_embed_dim: 256
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dropout: 0.1
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layers: 3
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embed_dim: 256
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dataset:
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s: 1
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num_workers: 0
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valid_size: 0.1
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ms2_file: "/home/xieting/cl_data/hcd3_0.01test/train_hcd_posh_10.mgf"
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smi_file: "/home/xieting/cl_data/hcd3_0.01test/train_hcd_posh_10_smi.npy"
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loss:
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temperature: 0.1
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use_cosine_similarity: True
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alpha_weight: 0.75
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