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- # ๐Ÿ”ฌ ViTAMIn-O: Vision-based Tools for Automated Microscopy in Organoids
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- Welcome to the official model hub for **ViTAMIn-O**. This organization serves as an open-science database for customized, vision-based deep learning models specifically trained for organoid classification, prediction, and concept discovery.
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- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1cpPTiMLglTXw759Z59Fd3HQCoE7qnvL5?usp=sharing)
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- ## ๐Ÿ“– About the Framework
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- ViTAMIn-O is a code-free, Colab-based infrastructure designed to democratize deep learning for biological researchers. Without prior coding experience, researchers can seamlessly upload imaging datasets, fine-tune state-of-the-art vision foundation models (like Swin and DINOv2), and discover novel biological concepts using our OrgACE pipeline.
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- ## ๐Ÿ—‚๏ธ The Model Database
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- This hub hosts models trained by the community. You can explore the models via our **Collections**, which categorize models by organoid type (e.g., Ductal, Intestinal, Cerebral) and task (Linear Probing vs. Fine-Tuning).
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  ### How to Contribute
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- We encourage researchers to share their specialized models!
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- 1. Open the [ViTAMIn-O Colab Dashboard](YOUR_COLAB_LINK_HERE).
 
 
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  2. Train your custom model using your dataset.
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- 3. Check the **"Upload to Hugging Face"** box in the UI.
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- 4. Input your personal HF Token and the target Repo Name.
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- 5. Once your model is on your personal profile, request to add it to one of our Collections!
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- ## ๐Ÿ“ Citation
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- If you use the ViTAMIn-O framework or any models hosted in this hub, please cite our paper:
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- > *[Author Names], "ViTAMIn-O: [Full Paper Title]," [Journal Name], 2026. [DOI Link]*
 
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+ # ViTAMIn-O: Democratizing computer vision-based machine learning for stem cell research
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+ Welcome to the official model hub for **ViTAMIn-O**. This organization serves as an open-science database for customized, vision-based deep learning models specifically trained for organoid cross-sectional classification, longitudinal prediction, downstream model evaluation, and concept discovery.
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+ ColabViTAMIn-O [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1cpPTiMLglTXw759Z59Fd3HQCoE7qnvL5?usp=sharing)
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+ ## About ColabViTAMIn-O
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+ ViTAMIn-O is a code-free, Colab-based infrastructure designed to encourage wet-lab scientists to use deep learning in their workflows. Without prior coding experience, researchers can seamlessly upload imaging datasets, fine-tune state-of-the-art vision foundation models, and discover morphologically-grounded concepts using the OrgACE pipeline.
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+ ## The ViTAMIn-O Model Hub
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+ This hub hosts models trained by the community. You can explore the models via our **Collections**, which categorize models by organoid type (e.g., Ductal, Intestinal, Cerebral).
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  ### How to Contribute
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+ We encourage motivated researchers to share their specialized models.
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+ A quick guide:
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+
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+ 1. Open the [ViTAMIn-O Colab Dashboard](https://colab.research.google.com/drive/1cpPTiMLglTXw759Z59Fd3HQCoE7qnvL5?usp=sharing).
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  2. Train your custom model using your dataset.
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+ 3. Check the **"Upload to Hugging Face"** box under 2. Task Settings.
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+ 4. Input your personal HF token and the target Repo name.
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+ 5. Once your model is on your personal profile, request to add it to one of our collections, we will catch up within 48 hours!
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+ ## Important
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+ If you use the ViTAMIn-O framework or any shared models hosted in this hub, please cite the corresponding paper where available.