Update README.md
Browse files
README.md
CHANGED
|
@@ -7,26 +7,27 @@ sdk: static
|
|
| 7 |
pinned: false
|
| 8 |
---
|
| 9 |
|
| 10 |
-
#
|
| 11 |
|
| 12 |
-
Welcome to the official model hub for **ViTAMIn-O**. This organization serves as an open-science database for customized, vision-based deep learning models specifically trained for organoid classification, prediction, and concept discovery.
|
| 13 |
|
| 14 |
-
[](https://colab.research.google.com/drive/1cpPTiMLglTXw759Z59Fd3HQCoE7qnvL5?usp=sharing)
|
| 15 |
|
| 16 |
-
##
|
| 17 |
-
ViTAMIn-O is a code-free, Colab-based infrastructure designed to
|
| 18 |
|
| 19 |
-
##
|
| 20 |
-
This hub hosts models trained by the community. You can explore the models via our **Collections**, which categorize models by organoid type (e.g., Ductal, Intestinal, Cerebral)
|
| 21 |
|
| 22 |
### How to Contribute
|
| 23 |
-
We encourage researchers to share their specialized models
|
| 24 |
-
|
|
|
|
|
|
|
| 25 |
2. Train your custom model using your dataset.
|
| 26 |
-
3. Check the **"Upload to Hugging Face"** box
|
| 27 |
-
4. Input your personal HF
|
| 28 |
-
5. Once your model is on your personal profile, request to add it to one of our
|
| 29 |
|
| 30 |
-
##
|
| 31 |
-
If you use the ViTAMIn-O framework or any models hosted in this hub, please cite
|
| 32 |
-
> *[Author Names], "ViTAMIn-O: [Full Paper Title]," [Journal Name], 2026. [DOI Link]*
|
|
|
|
| 7 |
pinned: false
|
| 8 |
---
|
| 9 |
|
| 10 |
+
# ViTAMIn-O: Democratizing computer vision-based machine learning for stem cell research
|
| 11 |
|
| 12 |
+
Welcome to the official model hub for **ViTAMIn-O**. This organization serves as an open-science database for customized, vision-based deep learning models specifically trained for organoid cross-sectional classification, longitudinal prediction, downstream model evaluation, and concept discovery.
|
| 13 |
|
| 14 |
+
ColabViTAMIn-O [](https://colab.research.google.com/drive/1cpPTiMLglTXw759Z59Fd3HQCoE7qnvL5?usp=sharing)
|
| 15 |
|
| 16 |
+
## About ColabViTAMIn-O
|
| 17 |
+
ViTAMIn-O is a code-free, Colab-based infrastructure designed to encourage wet-lab scientists to use deep learning in their workflows. Without prior coding experience, researchers can seamlessly upload imaging datasets, fine-tune state-of-the-art vision foundation models, and discover morphologically-grounded concepts using the OrgACE pipeline.
|
| 18 |
|
| 19 |
+
## The ViTAMIn-O Model Hub
|
| 20 |
+
This hub hosts models trained by the community. You can explore the models via our **Collections**, which categorize models by organoid type (e.g., Ductal, Intestinal, Cerebral).
|
| 21 |
|
| 22 |
### How to Contribute
|
| 23 |
+
We encourage motivated researchers to share their specialized models.
|
| 24 |
+
A quick guide:
|
| 25 |
+
|
| 26 |
+
1. Open the [ViTAMIn-O Colab Dashboard](https://colab.research.google.com/drive/1cpPTiMLglTXw759Z59Fd3HQCoE7qnvL5?usp=sharing).
|
| 27 |
2. Train your custom model using your dataset.
|
| 28 |
+
3. Check the **"Upload to Hugging Face"** box under 2. Task Settings.
|
| 29 |
+
4. Input your personal HF token and the target Repo name.
|
| 30 |
+
5. Once your model is on your personal profile, request to add it to one of our collections, we will catch up within 48 hours!
|
| 31 |
|
| 32 |
+
## Important
|
| 33 |
+
If you use the ViTAMIn-O framework or any shared models hosted in this hub, please cite the corresponding paper where available.
|
|
|