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syntheogenesis / tests

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6 contributors

History: 38 commits

Tengo Gzirishvili

Highlight mutated codons in red on generated variant DNA

d748f97 about 3 hours ago

README.md

2.24 kB
CRISPR M0: validation test suite + fix KO cut-position copy-paste bug about 1 month ago
conftest.py

517 Bytes
CRISPR M0: validation test suite + fix KO cut-position copy-paste bug about 1 month ago
test_active_learning.py

7.7 kB
test: cover DE active-learning surrogate (Design→Build→Test→Learn) about 1 month ago
test_agent.py

14.4 kB
Turing: collapse long sequences in chat, add context-window meter about 14 hours ago
test_agent_routes.py

1.2 kB
Turing: retroactive seed cleanup + auto-recover expired sessions about 15 hours ago
test_agent_tools.py

20.6 kB
Highlight mutated codons in red on generated variant DNA about 3 hours ago
test_aggregate.py

8.95 kB
feat: richer DE aggregate — substitution × ESM ΔLL bin (opt-in, gated) about 1 month ago
test_align.py

1.82 kB
Add pairwise sequence alignment (Needleman–Wunsch / Smith–Waterman) about 1 month ago
test_base_editor.py

7.76 kB
CRISPR M1: base-editing design mode (CBE/ABE + iSTOP + AA consequence) about 1 month ago
test_clone_sim.py

4.57 kB
Plasmid Studio M3 + M4: sequence editor + cloning simulation about 1 month ago
test_cloning.py

3.53 kB
CRISPR M0: validation test suite + fix KO cut-position copy-paste bug about 1 month ago
test_crispr.py

11 kB
CRISPR M0: validation test suite + fix KO cut-position copy-paste bug about 1 month ago
test_exon.py

2.9 kB
CRISPR M0: validation test suite + fix KO cut-position copy-paste bug about 1 month ago
test_identify.py

5.29 kB
Fix: Identify/AlphaFold dead-ends on heavily-sequenced proteins (e.g. Cas9) about 1 month ago
test_ip_radar.py

6.62 kB
IP Radar patents (env-gated) + Toxicity & Synthesis Oracle (Red Team) about 1 month ago
test_offtarget.py

3.74 kB
CRISPR M0: validation test suite + fix KO cut-position copy-paste bug about 1 month ago
test_outcomes.py

10.1 kB
feat: primer + cloning capture loops on the unified framework about 1 month ago
test_plasmid.py

8.49 kB
Plasmid: richer common-features auto-annotation (SnapGene-style) about 1 month ago
test_plasmid_api.py

4.42 kB
Adversarial audit of Plasmid Studio: fix XSS, DoS, and input-validation gaps about 1 month ago
test_primer_design.py

6.5 kB
feat: primer/PCR versatility — design, multiplex, local specificity (backend) about 1 month ago
test_primer_save.py

5.76 kB
Unified "My designs" hub: save every tool, not just CRISPR about 1 month ago
test_primer_scan.py

10.1 kB
Primer Picker: add strict 3'-end matching knob for the specificity scan about 1 month ago
test_primers.py

10.5 kB
Primer Picker: separate intended product from off-targets; collapse redundant hits about 1 month ago
test_rederive.py

1.6 kB
Fix reported production bugs: stuck dropdowns, blocked SNP, session loop about 1 month ago
test_resolve.py

6.35 kB
Fix AlphaFold viewer showing nothing (stale model version + silent 404) about 1 month ago
test_scoring.py

4.28 kB
Turing: wire ESM-2, fix auth header, friendly credits message, tool cards about 17 hours ago
test_security.py

7.53 kB
Security hardening: RLS-as-user, rate limiting, headers, PII + endpoint cleanup about 1 month ago