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from typing import Optional, List, Dict
from enum import Enum
from pydantic import BaseModel, Field
from utility import read_pdf
class Article(BaseModel):
file: str|object = Field(None, alias="file")
title: Optional[str] = Field(None, alias="title")
content: Optional[str]
def read_article(self):
if isinstance(self.file,str):
self.content = read_pdf(self.file)
else:
self.content = self.file.read()
class Table(BaseModel):
title: str = Field(None, alias="title")
fields: List[str] = Field(None, alias="Table column headings")
content: Optional[str] = Field(None, alias="Table content body")
class Summary(BaseModel):
tables: Optional[List[Table]] = Field(None, alias="tables")
class Region(Enum):
spine = "Spine"
extremity = "Extremity"
all = "All"
class Assessment(Enum):
overview = "overview"
clinical = "clinical"
radiologic = "radiologic"
safety = "safety"
other = "other"
class Section(Enum):
abstract = "Abstract"
introduction = "Introduction"
methods = "Material and Methods"
results = "Results"
discussion = "Discussion"
conclusion = "Conclusion"
references = "References"
ifu = "IFU"
class Parameter(BaseModel):
name: str
value: str
unit: str
condition:Optional[str] = Field(None, alias="condition")
assessment:Assessment = Field(None, description="The clinical trail assessment steps")
class Preference(BaseModel):
name: str
params: List[Parameter] = Field(None, alias="parameters")
class ArticleCollection(BaseModel):
articles: List[Article] = Field(None, alias="articles")
summary: Optional[Summary] = Field(None, alias="summary")
preferences: Preference = Field(None, alias="preferences")
class ClinicalStudy(Article):
tables: Optional[List[Table]] = Field(None, alias="tables")
acceptance_year: Optional[int] = Field(None, alias="acceptance_year")
acceptance_month: Optional[int] = Field(None, alias="acceptance_month")
sections: Optional[Dict[Section,str]] = Field(None, alias="sections")
class DeviceIFU(Article):
tables: Optional[List[Table]] = Field(None, alias="tables")
sections: Optional[List[str]] = Field(None, alias="sections")
sectionCollection: Optional[List[str]] = Field(None, alias="sectionCollection")
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