ADR-0001 Phase 2 Mode A: early integration (T7 + T8 + T9) a7a8caa
avoigt1121 Claude Opus 4.8 commited on
Commit History
fix: load bulk-dataset h5ad/CSV from URLs, not just local paths 674c230
avoigt1121 Claude Opus 4.8 commited on
Dedup: extract subset_and_require_group shared by activity_stats + microarray c9ed4f0
avoigt1121 Claude Opus 4.8 commited on
HF wheel registry, pinned deps, apt probe, security scan, API-key fallback 18391e3
avoigt1121 commited on
Replace rpy2 limma bridge with Rscript subprocess — fixes all conversion errors 95543ce
avoigt1121 Claude Sonnet 4.6 commited on
Fix run_limma: rename R globals from _lm_ to .lm_ (R names can't start with underscore) 20a83dd
avoigt1121 commited on
Rewrite run_limma: build design matrix in R to fix non-conformable arrays cbf6b80
avoigt1121 Claude Sonnet 4.6 commited on
Broaden rpy2 converter fallback to catch TypeError in addition to AttributeError be3cb0a
avoigt1121 commited on
Fix limma: wrap all numpy→R and R→pandas ops in localconverter 2ff8776
avoigt1121 Claude Sonnet 4.6 commited on
Fix limma: replace deprecated rpy2 .activate() API with localconverter 0ead534
avoigt1121 Claude Sonnet 4.6 commited on
Remove dead code and standardize MCP tool return schemas 93a454a
avoigt1121 Claude Sonnet 4.6 (1M context) commited on
Added seperate files, added tests 33406e8
avoigt1121 commited on
Add PDAC dataset adapter, workflow, semantic, and analysis layers 352e308
avoigt1121 Claude Sonnet 4.6 (1M context) commited on