Spaces:

Duplicated from Paper2Agent/alphagenome_agent

anne-voigt
/

Paper2Agent_decoupleRpy

Running

App Files Files Community

Paper2Agent_decoupleRpy

2.22 MB

Ctrl+K

Ctrl+K

5 contributors

History: 265 commits

anne-voigt's picture

feat(uploads): ADR-0011 manual-upload safety gate (Now slice)

74d4e89 verified about 2 months ago

docs
feat(uploads): ADR-0011 manual-upload safety gate (Now slice) about 2 months ago
resources
fix: resolve CollecTRI TF symbols + restore igraph network plot 2 months ago
scripts
feat(logging): add verify_s3_sink.py live-verify script (ADR-0009 Phase 2 prep) about 2 months ago
security
HF wheel registry, pinned deps, apt probe, security scan, API-key fallback 2 months ago
src
feat(uploads): ADR-0011 manual-upload safety gate (Now slice) about 2 months ago
tests
feat(uploads): ADR-0011 manual-upload safety gate (Now slice) about 2 months ago
.gitattributes
1.52 kB
Initial commit: DecoupleRpy agent 4 months ago
.gitignore
236 Bytes
feat(uploads): ADR-0011 manual-upload safety gate (Now slice) about 2 months ago
CLAUDE.md
18.2 kB
feat(loveless): ADR-0006 #6 — h5ad source type + Path P loading plan about 2 months ago
README.md
245 Bytes
Fix Space stuck on APP_STARTING: migrate gradio 5.49 -> 6.18 2 months ago
TCGA_PAAD_scope.md
15.4 kB
Add TCGA-PAAD scoping doc, dataset assembly scripts, ignore .claude/ 3 months ago
TODO.md
34.7 kB
feat(uploads): ADR-0011 manual-upload safety gate (Now slice) about 2 months ago
app.py
1.84 kB
Stage: pinned deps, API-key fallback, apt probe, security scan 2 months ago
fastmcp.json
193 Bytes
Flatten mcp/ folder and move mcp_server/ into src/ 4 months ago
gradio_ui.py
62.7 kB
Add configurable, always-on execution-trace log sink (local|hf|s3) about 2 months ago
images.png
2.19 kB
Initial commit: DecoupleRpy agent 4 months ago
mcp_config.yaml
2.38 kB
Use python3 instead of bare python for decoupleRpy MCP server command 2 months ago
memory.md
125 kB
feat(uploads): ADR-0011 manual-upload safety gate (Now slice) about 2 months ago
packages.txt
127 Bytes
Unpin lib*-dev in packages.txt to avoid build breaks on Debian security updates 2 months ago
prompts.yaml
42.1 kB
prompt(integration): reconcile point-3 reporting with decoupler_pool_cohorts (ComBat) 2 months ago
requirements.in
4.89 kB
fix(deps): re-pin broken tzlocal 5.4.2 -> 5.4.4 (unbreaks limma DE path) about 2 months ago
requirements.txt
12.5 kB
fix(deps): re-pin broken tzlocal 5.4.2 -> 5.4.4 (unbreaks limma DE path) about 2 months ago
server.py
8.87 kB
ADR-0001 Phase 1, steps 5-6 (T5): decoupler_meta_analyze + A->B->refuse wiring 2 months ago
session_export.docx
54.9 kB
Add TCGA-PAAD scoping doc, dataset assembly scripts, ignore .claude/ 3 months ago
ui_formatting.py
19.8 kB
UI exports: fix angle-bracket content loss; embed plots in downloads 2 months ago