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Duplicated from Paper2Agent/alphagenome_agent

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Paper2Agent_decoupleRpy

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Paper2Agent_decoupleRpy / src /core

64.3 kB

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5 contributors

History: 26 commits

Annie Voigt

fix(tools): select the contrast row positionally so top_table cannot fail the tool

d618f5b 19 days ago

__init__.py

1.04 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
access_control.py

6.34 kB
feat(auth): OAuth + allow-list gate on the specialist UI (ADR-0012) (#1) about 2 months ago
combine.py

12.4 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
constants.py

4.22 kB
fix(scoring): close the six PROGENy per-sample gaps from the GSE205154 eval 22 days ago
data_io.py

4.6 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
integrity.py

7.32 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
paths.py

1.69 kB
refactor: move writable-dir constants to core.paths, fix workflow->tools layer violation about 2 months ago
perf.py

1.51 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
run_metrics.py

7.7 kB
feat(metrics): instrument n_post_analysis_reads to test the 808b91d claim 19 days ago
top_table.py

6.21 kB
fix(tools): select the contrast row positionally so top_table cannot fail the tool 19 days ago
trace_redaction.py

10.5 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
types.py

752 Bytes
style: apply ruff lint --fix + ruff format across the tree about 2 months ago