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Duplicated from Paper2Agent/alphagenome_agent

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Paper2Agent_decoupleRpy

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Paper2Agent_decoupleRpy / src

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5 contributors

History: 174 commits

Annie Voigt

fix: dataset_load Path P now returns the h5ad; re-pin biodata-registry 0.1.16

435a806 12 days ago

core
fix(tools): select the contrast row positionally so top_table cannot fail the tool 18 days ago
datasets
fix(schema): port the survival-only group_columns exemption from biodata-registry 19 days ago
managers
fix(agent,ui,prompt): cut the measured step waste, and stop mislabelling timeouts 20 days ago
mcp_server
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
semantic
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
tools
fix: dataset_load Path P now returns the h5ad; re-pin biodata-registry 0.1.16 12 days ago
uploads
feat(upload): assemble raw counts/TPM/metadata into an h5ad inside the gate 14 days ago
workflows
fix(scoring): resolve gene symbols from var; never let a sample filter no-op 21 days ago
agent.py

31.1 kB
feat(metrics): instrument n_post_analysis_reads to test the 808b91d claim 19 days ago
cache.py

9.17 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
logging_sink.py

9.53 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago