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Paper2Agent_decoupleRpy

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Paper2Agent_decoupleRpy / src /workflows

249 kB

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5 contributors

History: 38 commits

Annie Voigt

fix(scoring): resolve gene symbols from var; never let a sample filter no-op

5d4961a 21 days ago

__init__.py

1.59 kB
Add PDAC dataset adapter, workflow, semantic, and analysis layers 4 months ago
activity_scoring.py

21.6 kB
fix(scoring): close the six PROGENy per-sample gaps from the GSE205154 eval 21 days ago
activity_stats.py

11.5 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
concordance.py

12.2 kB
refactor: tighten invariant-length zips to strict=True (B905) about 2 months ago
geo.py

24.2 kB
refactor: tighten invariant-length zips to strict=True (B905) about 2 months ago
integration.py

13.7 kB
refactor: move writable-dir constants to core.paths, fix workflow->tools layer violation about 2 months ago
manifest_data_validation.py

21.4 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
meta_analysis.py

24.3 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
metadata_validation.py

25.3 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
microarray.py

43.2 kB
fix(scoring): resolve gene symbols from var; never let a sample filter no-op 21 days ago
pseudobulk.py

18.4 kB
fix(sc,ui): filter lowly-expressed genes after pseudobulk; sweep every output dir 21 days ago
sanity_checks.py

19.5 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
signatures.py

6.9 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago
survival.py

5.4 kB
style: apply ruff lint --fix + ruff format across the tree about 2 months ago