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Paper2Agent_decoupleRpy

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Paper2Agent_decoupleRpy

2.12 MB

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6 contributors

History: 257 commits

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fix(rna_sc): harden load/visualize UMAP against missing embedding/leiden

9d23b39 verified about 2 months ago

docs
feat(loveless): Role-2 signature consumable — resolve private signature URLs about 2 months ago
resources
fix: resolve CollecTRI TF symbols + restore igraph network plot 2 months ago
scripts
scripts: add WIP cptac_pda_counts (raw-counts/Path A) assembly script 2 months ago
security
HF wheel registry, pinned deps, apt probe, security scan, API-key fallback 2 months ago
src
fix(rna_sc): harden load/visualize UMAP against missing embedding/leiden about 2 months ago
tests
fix(rna_sc): harden load/visualize UMAP against missing embedding/leiden about 2 months ago
.gitattributes

1.52 kB
Initial commit: DecoupleRpy agent 5 months ago
.gitignore

115 Bytes
Add TCGA-PAAD scoping doc, dataset assembly scripts, ignore .claude/ 3 months ago
CLAUDE.md

18.2 kB
feat(loveless): ADR-0006 #6 — h5ad source type + Path P loading plan about 2 months ago
README.md

245 Bytes
Fix Space stuck on APP_STARTING: migrate gradio 5.49 -> 6.18 2 months ago
TCGA_PAAD_scope.md

15.4 kB
Add TCGA-PAAD scoping doc, dataset assembly scripts, ignore .claude/ 3 months ago
TODO.md

32.4 kB
fix(rna_sc): harden load/visualize UMAP against missing embedding/leiden about 2 months ago
app.py

1.84 kB
Stage: pinned deps, API-key fallback, apt probe, security scan 2 months ago
fastmcp.json

193 Bytes
Flatten mcp/ folder and move mcp_server/ into src/ 4 months ago
gradio_ui.py

61.3 kB
fix(mcp): make HTTP server win on HF cold start (pipe-deadlock + readiness budget) 2 months ago
images.png

2.19 kB
Initial commit: DecoupleRpy agent 5 months ago
mcp_config.yaml

2.38 kB
Use python3 instead of bare python for decoupleRpy MCP server command 2 months ago
memory.md

117 kB
fix(rna_sc): harden load/visualize UMAP against missing embedding/leiden about 2 months ago
packages.txt

127 Bytes
Unpin lib*-dev in packages.txt to avoid build breaks on Debian security updates 2 months ago
prompts.yaml

42.1 kB
prompt(integration): reconcile point-3 reporting with decoupler_pool_cohorts (ComBat) 2 months ago
requirements.in

3.85 kB
feat(loveless): integrate biodata-registry 0.1.8 sc datasets (Path P by modality) about 2 months ago
requirements.txt

12.5 kB
feat(loveless): integrate biodata-registry 0.1.8 sc datasets (Path P by modality) about 2 months ago
server.py

8.87 kB
ADR-0001 Phase 1, steps 5-6 (T5): decoupler_meta_analyze + A->B->refuse wiring 2 months ago
session_export.docx

54.9 kB
Add TCGA-PAAD scoping doc, dataset assembly scripts, ignore .claude/ 3 months ago
ui_formatting.py

19.8 kB
UI exports: fix angle-bracket content loss; embed plots in downloads 2 months ago