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Paper2Agent_decoupleRpy

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Paper2Agent_decoupleRpy / src /workflows

215 kB

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5 contributors

History: 30 commits

Anne Voigt

feat(loveless): Role-2 signature consumable — resolve private signature URLs

6cda24b about 2 months ago

__init__.py

1.59 kB
Add PDAC dataset adapter, workflow, semantic, and analysis layers 4 months ago
activity_scoring.py

11.1 kB
feat(loveless): ADR-0006 + agent-side sc serving scaffold about 2 months ago
activity_stats.py

11.5 kB
Dedup: extract subset_and_require_group shared by activity_stats + microarray 2 months ago
concordance.py

12.2 kB
feat(concordance): same-cohort normalization concordance routine (decoupler_normalization_concordance) 2 months ago
geo.py

23.6 kB
HF wheel registry, pinned deps, apt probe, security scan, API-key fallback 2 months ago
integration.py

13.7 kB
feat(integration): ComBat per-sample scoring tool decoupler_pool_cohorts (ADR-0001 item 10) 2 months ago
manifest_data_validation.py

21.5 kB
Add dataset_validate_manifest_against_data tool and tests 3 months ago
meta_analysis.py

24.4 kB
ADR-0001 Phase 1, step 4: meta-analysis engine (Mode B late integration) 2 months ago
metadata_validation.py

25.5 kB
Dedup: extract subset_and_require_group shared by activity_stats + microarray 2 months ago
microarray.py

38.8 kB
ADR-0001 Phase 2 Mode A: early integration (T7 + T8 + T9) 2 months ago
sanity_checks.py

18.7 kB
feat(sanity): ADR-0002 Phase 2 — auto-fire tissue-identity contamination + PROGENy/Hallmark parity 2 months ago
signatures.py

6.86 kB
feat(loveless): Role-2 signature consumable — resolve private signature URLs about 2 months ago
survival.py

5.45 kB
Mark planned survival-stub params as intentionally unused (vulture) 2 months ago