Commit History

fix(ui): offer the SV modality; tests own the unsupported-modality refusal
9f3852c

avoigt1121 Claude Opus 5 commited on

fix(sv): read the frame claim out of `annotation`, and re-curate MSK
8f96c2d

avoigt1121 Claude Opus 5 commited on

fix(sv): read MSK's hyphenated frame claim, in the classifier AND the depth gate
5c04052

avoigt1121 Claude Opus 5 commited on

fix: close three silent-fallback wrong answers (modality, test floor, BYOD fusions)
40ab3dd

avoigt1121 Claude Fable 5 commited on

feat(sv): structural-variant modality (ADR-0008) β€” fusions, with three gates
0f39c3b

avoigt1121 Claude Fable 5 commited on

feat(panel): widen 19 β†’ 29 genes (HR + MMR), and stop silently dropping uncurated genes
7ae3398

avoigt1121 Claude Fable 5 commited on

fix: empty-genes parity + name the reason in the mouse BYOD refusal
35c0da0

avoigt1121 Claude Fable 5 commited on

feat(api): expose samples_profiled so callers can reconstruct WT
894e710

avoigt1121 commited on

feat(curate): add paad_cptac_2021 β€” the cohort the orchestrator join can align
ddfefd1

avoigt1121 commited on

merge: cohort survey + denominator fix into main (ADR-0006/0007)
80b5e01

avoigt1121 Claude Opus 5 commited on

cadence: re-curation policy for curated artifacts (ADR-0007)
9f31a37

avoigt1121 Claude Opus 5 commited on

cohorts: +2 curated (6 total); fix frequency denominators (TCGA KRAS 73%->91%)
736c0d2

avoigt1121 Claude Opus 5 commited on

C2: repost Broad CCLE terms in full (their continuity clause) + verify directly
085b9f7

avoigt1121 Claude Fable 5 commited on

deploy: attribution for the downloadable curated artifacts + fill the Space slug
2a92883

avoigt1121 Claude Fable 5 commited on

C2: per-study commercial-use review β€” CCLE is restricted, not CC BY 4.0
0d2f824

avoigt1121 Claude Fable 5 commited on

C3: the +URL in the User-Agent is the contact channel β€” no email needed
4a0ddc2

avoigt1121 Claude Fable 5 commited on

C2 + C3: per-study license gate and polite client β€” source conditions complete
51472a6

avoigt1121 Claude Fable 5 commited on

C4: curate-and-cache β€” the cBioPortal API leaves the request path
cb94eb2

avoigt1121 Claude Fable 5 commited on

M3 deploy surface: gradio_ui.py + src/server.py
0fdbc7e

avoigt1121 Claude Fable 5 commited on

M3: BYOD upload + deploy hardening
e922c35

avoigt1121 Claude Opus 4.8 commited on

M2: variant_by_subtype label-join + association test
e36b86b

avoigt1121 Claude Opus 4.8 commited on

M1: cBioPortal status-matrix curation + query_variant_status
693a67d

avoigt1121 Claude Opus 4.8 commited on

scaffold: pdac-genomics-agent β€” third specialist for PDAC DNA (mutation/CNV) analysis
63ea7bf

Annie Voigt Claude Opus 4.8 commited on