fix(ui): offer the SV modality; tests own the unsupported-modality refusal 9f3852c avoigt1121 Claude Opus 5 commited on 11 days ago
fix(sv): read the frame claim out of `annotation`, and re-curate MSK 8f96c2d avoigt1121 Claude Opus 5 commited on 19 days ago
fix(sv): read MSK's hyphenated frame claim, in the classifier AND the depth gate 5c04052 avoigt1121 Claude Opus 5 commited on 19 days ago
fix: close three silent-fallback wrong answers (modality, test floor, BYOD fusions) 40ab3dd avoigt1121 Claude Fable 5 commited on 20 days ago
feat(sv): structural-variant modality (ADR-0008) β fusions, with three gates 0f39c3b avoigt1121 Claude Fable 5 commited on 20 days ago
feat(panel): widen 19 β 29 genes (HR + MMR), and stop silently dropping uncurated genes 7ae3398 avoigt1121 Claude Fable 5 commited on 20 days ago
fix: empty-genes parity + name the reason in the mouse BYOD refusal 35c0da0 avoigt1121 Claude Fable 5 commited on 22 days ago
feat(api): expose samples_profiled so callers can reconstruct WT 894e710 avoigt1121 commited on 27 days ago
feat(curate): add paad_cptac_2021 β the cohort the orchestrator join can align ddfefd1 avoigt1121 commited on 27 days ago
merge: cohort survey + denominator fix into main (ADR-0006/0007) 80b5e01 avoigt1121 Claude Opus 5 commited on 27 days ago
cadence: re-curation policy for curated artifacts (ADR-0007) 9f31a37 avoigt1121 Claude Opus 5 commited on 28 days ago
cohorts: +2 curated (6 total); fix frequency denominators (TCGA KRAS 73%->91%) 736c0d2 avoigt1121 Claude Opus 5 commited on 28 days ago
C2: repost Broad CCLE terms in full (their continuity clause) + verify directly 085b9f7 avoigt1121 Claude Fable 5 commited on 28 days ago
deploy: attribution for the downloadable curated artifacts + fill the Space slug 2a92883 avoigt1121 Claude Fable 5 commited on about 1 month ago
C2: per-study commercial-use review β CCLE is restricted, not CC BY 4.0 0d2f824 avoigt1121 Claude Fable 5 commited on about 1 month ago
C3: the +URL in the User-Agent is the contact channel β no email needed 4a0ddc2 avoigt1121 Claude Fable 5 commited on about 1 month ago
C2 + C3: per-study license gate and polite client β source conditions complete 51472a6 avoigt1121 Claude Fable 5 commited on about 1 month ago
C4: curate-and-cache β the cBioPortal API leaves the request path cb94eb2 avoigt1121 Claude Fable 5 commited on about 1 month ago
M3 deploy surface: gradio_ui.py + src/server.py 0fdbc7e avoigt1121 Claude Fable 5 commited on about 1 month ago
M2: variant_by_subtype label-join + association test e36b86b avoigt1121 Claude Opus 4.8 commited on Jul 24
M1: cBioPortal status-matrix curation + query_variant_status 693a67d avoigt1121 Claude Opus 4.8 commited on Jul 24
scaffold: pdac-genomics-agent β third specialist for PDAC DNA (mutation/CNV) analysis 63ea7bf Annie Voigt Claude Opus 4.8 commited on Jul 24