merge: raw-result legibility — summary table, abridged JSON, full-payload download

fix(ui): make the raw-result accordion legible without touching the payload

fix(ui): offer the SV modality; tests own the unsupported-modality refusal

subtype-join: close the cohort search as a negative result; state orchestrator-only on the tab

fix(ui): show ADR-0004 denials in the caution box, not only the collapsed JSON

feat(auth): decide the whoami cache's TTL and HF-outage behaviour (ADR-0009)

fix(ui): say "structural variant" in the header, and stop stacking the chart

fix(ui): clear the chart before answering, and drop `colors_in_legend`

fix(sv): read the frame claim out of `annotation`, and re-curate MSK

fix(sv): read MSK's hyphenated frame claim, in the classifier AND the depth gate

fix(ui): the two ways the screen disagreed with the payload

fix: close three silent-fallback wrong answers (modality, test floor, BYOD fusions)

feat(sv): structural-variant modality (ADR-0008) — fusions, with three gates

feat(panel): widen 19 → 29 genes (HR + MMR), and stop silently dropping uncurated genes

fix: empty-genes parity + name the reason in the mouse BYOD refusal

docs(deploy): re-sync the orchestrator registration descriptor with the live Space

feat(api): expose samples_profiled so callers can reconstruct WT

hooks: keep the GitHub mirror in step with every deploy

fix: main shipped unresolved conflict markers; guard against a repeat

verify: routing leg passes; dispatch blocked by private-Space 404 (HF_TOKEN unset)

api: name the caller side on machine-endpoint argument errors

merge: cohort survey + denominator fix into main (ADR-0006/0007)

ci: weekly curated-artifact freshness check (ADR-0007)

cadence: re-curation policy for curated artifacts (ADR-0007)

cohorts: +2 curated (6 total); fix frequency denominators (TCGA KRAS 73%->91%)

auth: diagnose machine-API denials; the Space gate was never broken

C2: per-study commercial-use review — CCLE is restricted, not CC BY 4.0

C2 + C3: per-study license gate and polite client — source conditions complete

C4: curate-and-cache — the cBioPortal API leaves the request path

M3 deploy surface: gradio_ui.py + src/server.py

M3: BYOD upload + deploy hardening

M2: variant_by_subtype label-join + association test

M1: cBioPortal status-matrix curation + query_variant_status

scaffold: pdac-genomics-agent — third specialist for PDAC DNA (mutation/CNV) analysis