README.md

metadata

title: GLUE Agent MCP
emoji: 🧬
colorFrom: blue
colorTo: purple
sdk: docker
app_port: 7860
pinned: false

GLUE Agent MCP Server

Remote MCP (Model Context Protocol) server for GLUE (Graph-Linked Unified Embedding) multi-omics data integration.

Tools

Preprocessing

• glue_preprocess_scrna — Preprocess scRNA-seq data with HVG selection, normalization, and PCA
• glue_preprocess_scatac — Preprocess scATAC-seq data with LSI dimension reduction
• glue_construct_regulatory_graph — Construct prior regulatory graph linking RNA and ATAC features

Training

• glue_configure_datasets — Configure RNA-seq and ATAC-seq datasets for GLUE model training
• glue_train_model — Train GLUE model for multi-omics integration
• glue_check_integration_consistency — Evaluate integration quality with consistency scores
• glue_generate_embeddings — Generate cell and feature embeddings from trained GLUE model

Usage

Add to your MCP client config:

{
  "mcpServers": {
    "GLUE_Agent": {
      "url": "https://dmannk-glue-agent-mcp.hf.space/mcp"
    }
  }
}