dylanplummer commited on
Commit
b7623ae
·
1 Parent(s): 276281c

add tf ko examples

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Files changed (1) hide show
  1. app.py +8 -6
app.py CHANGED
@@ -479,18 +479,20 @@ with gr.Blocks(theme='WeixuanYuan/Soft_dark') as demo:
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  inputs = [in_locus, anchor1, anchor2, max_gene_checkbox, tf_ko]
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  outputs = [out_img, out_violin, out_violin_new, out_violin_fc]
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- gr.Examples(examples=[['INS', 'chr11:2,289,895', 'chr11:2,298,840', False],
 
 
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  # ['OTUD3', 'chr1:20457786', 'chr1:20230413', False],
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- ['IRX2', 'chr5:2704405', 'chr5:2164879', False],
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- ['TSPAN1', 'TSPAN1', 'PIK3R3', False],
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  # ['IRX1', 'chr5:5397612', 'chr5:4850008', False],
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  ['GCG', 'GCG', 'FAP', False],
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  # ['GCG', 'chr2:163162903', 'chr2:162852164', True],
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- ['LOXL4', 'chr10:100186215', 'chr10:99913493', False],
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  # ['KRT19', 'chr17:22,220,637', 'chr17:39,591,813', False],
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  # ['LPP', 'chr3:188,097,749', 'chr3:197,916,262', False],
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- ['MAFB', 'chr20:39431654', 'chr20:39368271', True],
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- ['CEL', 'chr9:135,937,365', 'chr9:135,973,107', False]],
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  inputs=inputs,
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  outputs=outputs,
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  fn=perturb, cache_examples=os.getenv('SYSTEM') == 'spaces')
 
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  inputs = [in_locus, anchor1, anchor2, max_gene_checkbox, tf_ko]
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  outputs = [out_img, out_violin, out_violin_new, out_violin_fc]
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+ gr.Examples(examples=[['INS', 'chr11:2,289,895', 'chr11:2,298,840', False, False],
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+ ['BHLHA15', '', '', True, True],
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+ ['FOXA2', '', '', True, True], # https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878272/
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  # ['OTUD3', 'chr1:20457786', 'chr1:20230413', False],
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+ ['IRX2', 'chr5:2704405', 'chr5:2164879', False, False],
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+ ['TSPAN1', 'TSPAN1', 'PIK3R3', False, False],
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  # ['IRX1', 'chr5:5397612', 'chr5:4850008', False],
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  ['GCG', 'GCG', 'FAP', False],
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  # ['GCG', 'chr2:163162903', 'chr2:162852164', True],
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+ ['LOXL4', 'chr10:100186215', 'chr10:99913493', False, False],
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  # ['KRT19', 'chr17:22,220,637', 'chr17:39,591,813', False],
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  # ['LPP', 'chr3:188,097,749', 'chr3:197,916,262', False],
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+ ['MAFB', 'chr20:39431654', 'chr20:39368271', True, False],
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+ ['CEL', 'chr9:135,937,365', 'chr9:135,973,107', False, False]],
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  inputs=inputs,
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  outputs=outputs,
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  fn=perturb, cache_examples=os.getenv('SYSTEM') == 'spaces')