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Runtime error
Runtime error
Commit ·
b7623ae
1
Parent(s): 276281c
add tf ko examples
Browse files
app.py
CHANGED
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@@ -479,18 +479,20 @@ with gr.Blocks(theme='WeixuanYuan/Soft_dark') as demo:
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inputs = [in_locus, anchor1, anchor2, max_gene_checkbox, tf_ko]
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outputs = [out_img, out_violin, out_violin_new, out_violin_fc]
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gr.Examples(examples=[['INS', 'chr11:2,289,895', 'chr11:2,298,840', False],
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# ['OTUD3', 'chr1:20457786', 'chr1:20230413', False],
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['IRX2', 'chr5:2704405', 'chr5:2164879', False],
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['TSPAN1', 'TSPAN1', 'PIK3R3', False],
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# ['IRX1', 'chr5:5397612', 'chr5:4850008', False],
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['GCG', 'GCG', 'FAP', False],
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# ['GCG', 'chr2:163162903', 'chr2:162852164', True],
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['LOXL4', 'chr10:100186215', 'chr10:99913493', False],
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# ['KRT19', 'chr17:22,220,637', 'chr17:39,591,813', False],
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# ['LPP', 'chr3:188,097,749', 'chr3:197,916,262', False],
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['MAFB', 'chr20:39431654', 'chr20:39368271', True],
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['CEL', 'chr9:135,937,365', 'chr9:135,973,107', False]],
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inputs=inputs,
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outputs=outputs,
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fn=perturb, cache_examples=os.getenv('SYSTEM') == 'spaces')
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inputs = [in_locus, anchor1, anchor2, max_gene_checkbox, tf_ko]
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outputs = [out_img, out_violin, out_violin_new, out_violin_fc]
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gr.Examples(examples=[['INS', 'chr11:2,289,895', 'chr11:2,298,840', False, False],
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['BHLHA15', '', '', True, True],
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['FOXA2', '', '', True, True], # https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878272/
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# ['OTUD3', 'chr1:20457786', 'chr1:20230413', False],
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['IRX2', 'chr5:2704405', 'chr5:2164879', False, False],
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| 487 |
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['TSPAN1', 'TSPAN1', 'PIK3R3', False, False],
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# ['IRX1', 'chr5:5397612', 'chr5:4850008', False],
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['GCG', 'GCG', 'FAP', False],
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# ['GCG', 'chr2:163162903', 'chr2:162852164', True],
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['LOXL4', 'chr10:100186215', 'chr10:99913493', False, False],
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# ['KRT19', 'chr17:22,220,637', 'chr17:39,591,813', False],
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# ['LPP', 'chr3:188,097,749', 'chr3:197,916,262', False],
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['MAFB', 'chr20:39431654', 'chr20:39368271', True, False],
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['CEL', 'chr9:135,937,365', 'chr9:135,973,107', False, False]],
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inputs=inputs,
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outputs=outputs,
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fn=perturb, cache_examples=os.getenv('SYSTEM') == 'spaces')
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