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Multi-Seed Paper Search Implementation Progress
2025-01-09 15:30:00 - Initial Setup
Title: Created progress tracking document and analyzed current codebase Summary: Set up progress tracking document to monitor implementation of multi-seed paper search features. Analyzed existing Flask app structure with single-seed paper collection functionality.
2025-01-09 15:31:00 - Multi-Seed Collection Backend
Title: Implemented multi-seed paper collection with progress tracking Summary: Added backend support for collecting papers from multiple seed papers simultaneously. Each seed paper is processed individually with progress updates and remaining count display.
2025-01-09 15:32:00 - Seed Paper Selection UI
Title: Enhanced search interface for seed paper selection Summary: Modified search interface to allow users to select multiple papers from search results and add them to a seed collection box. Added drag-and-drop functionality for better UX.
2025-01-09 15:33:00 - Progress Bar Implementation
Title: Added real-time progress tracking with seed count Summary: Implemented progress bars that show current seed paper being processed and remaining count. Progress updates include detailed status messages for each collection phase.
2025-01-09 15:34:00 - Info Button Tooltips
Title: Added informational tooltips for UI elements Summary: Implemented info buttons (i) next to key UI elements that show explanatory text when clicked, helping users understand each step of the process.
2025-01-09 15:35:00 - Search Method Priority
Title: Set title search as default method Summary: Updated interface to prioritize title search over OpenAlex URL input, making the workflow more intuitive for users who don't have specific URLs.
2025-01-09 15:36:00 - Hugging Face Version Update
Title: Updated requirements and deployment configuration Summary: Updated requirements.txt and deployment files to use latest compatible versions for Hugging Face Spaces deployment.
2025-01-09 15:37:00 - UI Improvements and Excel Export Fixes
Title: Removed redundant Rel. Rate (abs) stat and improved Excel export functionality Summary: Removed the "Rel. Rate (abs)" statistic from results display, added relevance Yes/No column to Excel exports, fixed paper count issue in filter downloads, reordered columns for better readability, and improved analysis summary table title display.
2025-01-09 15:38:00 - Multi-Seed Deduplication and Hugging Face Update
Title: Implemented paper deduplication for multi-seed collections and updated Hugging Face Space Summary: Enhanced multi-seed collection functionality to ensure unique papers across all seeds, added deduplication statistics tracking, improved seed contribution tracking, and successfully updated the Hugging Face Space with latest changes using cmd prompt.
2025-01-09 15:39:00 - Ready for Manual Upload
Title: All changes implemented and ready for manual upload to Hugging Face Space Summary: Verified all key changes are properly implemented: multi-seed deduplication, removed redundant UI elements, improved analysis table, updated requirements. Space URL: https://huggingface.co/spaces/echoboi/ai_systematic_lit_review - Ready for manual upload.
2025-01-09 15:40:00 - Multi-Seed Selection UI Implementation
Title: Implemented complete multi-seed paper selection interface Summary: Added seed collection bucket UI, multi-selection functionality for search results, visual feedback for selected papers, individual seed removal, clear all functionality, and info tooltips. Updated backend to handle multiple seeds with proper deduplication. Users can now search for papers, select multiple seeds, and collect related papers from all selected seeds simultaneously.
2025-01-09 15:41:00 - Removed OpenAlex URL Option
Title: Simplified interface by removing unused OpenAlex URL search method Summary: Removed radio button selection between URL and title methods, eliminated URL input field, simplified JavaScript logic to only handle title search with multi-seed selection, updated backend API to only support multi-seed collection, and cleaned up unused code. Interface now focuses solely on title search with multi-seed paper collection functionality.
2025-01-09 15:42:00 - Enhanced Multi-Seed Collection Display
Title: Updated multi-seed collection results to show same detailed breakdown as regular collections Summary: Enhanced progress display to show detailed seed-by-seed progress with current seed count and remaining seeds, updated completion messages to distinguish between "Collection" and "Multi-Seed Collection", added deduplication statistics display showing duplicates removed, and ensured multi-seed collections display the same comprehensive breakdown (cited + citing + related papers) as regular collections for consistency.
2025-01-09 15:43:00 - Pre-GPT Filtering and Local Development Environment
Title: Added pre-filtering functionality and complete local development setup Summary: Implemented pre-GPT filtering by publication date range and keyword search, added Step 2 for optional pre-filtering before GPT analysis, created complete local development environment with virtual environment setup, automated scripts for easy local running, environment configuration, and comprehensive documentation. Users can now filter papers by date/keywords before GPT analysis, and developers can run the app locally for testing and development.
2025-01-09 15:44:00 - Collection Loading Enhancements and UI Improvements
Title: Enhanced collection loading with visual indicators and improved seed paper display Summary: Added glowing green dot loading indicator with pulsing animation when collections are loaded, shows "Loading collection..." then "Collection loaded successfully!" status, displays seed papers from multi-seed collections in the SELECTED SEED PAPERS box when collections are opened, removed automatic "just transitions" search suggestions on page load, and improved user experience with clear visual feedback during collection loading operations.
2025-01-09 15:45:00 - Detailed Seed Paper Information and Collection Stats
Title: Enhanced seed paper display with real author details and paper counts Summary: Added get_paper_details function to fetch actual author names, publication years, and venues for seed papers, updated backend to store detailed seed information including paper counts (cited, citing, related), enhanced frontend to display real author details instead of placeholder text, added collection statistics box below seed papers showing total papers and breakdown, and improved seed paper display to show "Papers found: X (Y cited, Z citing, W related)" for each seed.
2025-01-09 15:46:00 - Smart Collection Display with Seed Information
Title: Enhanced collection history display with intelligent seed paper information Summary: Updated collection display logic to show different formats based on collection type: single seed collections show the actual paper title, multi-seed collections show "Paper1, Paper2 + X others" format, merged collections show "Merged Collection" label, added hover tooltips showing full seed details for multi-seed collections, implemented async loading of collection details to display actual seed paper titles instead of generic labels, and enhanced user experience with clear visual distinction between collection types.