Spaces:
Sleeping
Sleeping
| # Results | |
| ## Stage 1 - Clinical | |
| ### Late AMD | |
| ```text | |
| Endpoint: late_amd (Status_late_amd) | |
| Feature set: grading | |
| Loaded rows: 2246 | |
| Initial number of features: 4 | |
| Rows after cleaning: 2246 | |
| Split sizes: train=1580, val=221, test=445 | |
| Events: train=303, val=40, test=90 | |
| Features after variance filter: 4 | |
| Features after top-k selection: 4 | |
| Metrics | |
| { | |
| "train": { | |
| "split": "train", | |
| "n": 1580, | |
| "events": 303, | |
| "c_index": 0.8855778758440338 | |
| }, | |
| "val": { | |
| "split": "val", | |
| "n": 221, | |
| "events": 40, | |
| "c_index": 0.8816348923330133 | |
| }, | |
| "test": { | |
| "split": "test", | |
| "n": 445, | |
| "events": 90, | |
| "c_index": 0.8732695005183875 | |
| } | |
| } | |
| Saved outputs to: runs/stage1_late_amd_grading | |
| ``` | |
| ### Any GA | |
| ```text | |
| Endpoint: anyga (Status_anyga) | |
| Feature set: grading | |
| Loaded rows: 2246 | |
| Initial number of features: 4 | |
| Rows after cleaning: 2246 | |
| Split sizes: train=1580, val=221, test=445 | |
| Events: train=188, val=27, test=58 | |
| Features after variance filter: 4 | |
| Features after top-k selection: 4 | |
| Metrics | |
| { | |
| "train": { | |
| "split": "train", | |
| "n": 1580, | |
| "events": 188, | |
| "c_index": 0.8701093069888003 | |
| }, | |
| "val": { | |
| "split": "val", | |
| "n": 221, | |
| "events": 27, | |
| "c_index": 0.8747786740114106 | |
| }, | |
| "test": { | |
| "split": "test", | |
| "n": 445, | |
| "events": 58, | |
| "c_index": 0.8789303153379272 | |
| } | |
| } | |
| Saved outputs to: runs/stage1_anyga_grading | |
| ``` | |
| ### NV | |
| ```text | |
| Endpoint: nv (Status_nv) | |
| Feature set: grading | |
| Loaded rows: 2246 | |
| Initial number of features: 4 | |
| Rows after cleaning: 2246 | |
| Split sizes: train=1580, val=221, test=445 | |
| Events: train=181, val=23, test=48 | |
| Features after variance filter: 4 | |
| Features after top-k selection: 4 | |
| Metrics | |
| { | |
| "train": { | |
| "split": "train", | |
| "n": 1580, | |
| "events": 181, | |
| "c_index": 0.8859630279871941 | |
| }, | |
| "val": { | |
| "split": "val", | |
| "n": 221, | |
| "events": 23, | |
| "c_index": 0.8588550151268327 | |
| }, | |
| "test": { | |
| "split": "test", | |
| "n": 445, | |
| "events": 48, | |
| "c_index": 0.8415194442925121 | |
| } | |
| } | |
| Saved outputs to: runs/stage1_nv_grading | |
| ``` | |
| ## Stage 1 - Grading Clinical | |
| ### Late AMD | |
| ```text | |
| Endpoint: late_amd (Status_late_amd) | |
| Feature set: grading_clinical | |
| Loaded rows: 2246 | |
| Initial number of features: 6 | |
| Rows after cleaning: 2246 | |
| Split sizes: train=1580, val=221, test=445 | |
| Events: train=303, val=40, test=90 | |
| Features after variance filter: 6 | |
| Features after top-k selection: 6 | |
| Metrics | |
| { | |
| "train": { | |
| "split": "train", | |
| "n": 1580, | |
| "events": 303, | |
| "c_index": 0.889178746182056 | |
| }, | |
| "val": { | |
| "split": "val", | |
| "n": 221, | |
| "events": 40, | |
| "c_index": 0.881909203127143 | |
| }, | |
| "test": { | |
| "split": "test", | |
| "n": 445, | |
| "events": 90, | |
| "c_index": 0.8796731109349272 | |
| } | |
| } | |
| Saved outputs to: runs/stage1_late_amd_grading_clinical | |
| ``` | |
| ### Any GA | |
| ```text | |
| Endpoint: anyga (Status_anyga) | |
| Feature set: grading_clinical | |
| Loaded rows: 2246 | |
| Initial number of features: 6 | |
| Rows after cleaning: 2246 | |
| Split sizes: train=1580, val=221, test=445 | |
| Events: train=188, val=27, test=58 | |
| Features after variance filter: 6 | |
| Features after top-k selection: 6 | |
| Metrics | |
| { | |
| "train": { | |
| "split": "train", | |
| "n": 1580, | |
| "events": 188, | |
| "c_index": 0.8721511713209762 | |
| }, | |
| "val": { | |
| "split": "val", | |
| "n": 221, | |
| "events": 27, | |
| "c_index": 0.8756639779657682 | |
| }, | |
| "test": { | |
| "split": "test", | |
| "n": 445, | |
| "events": 58, | |
| "c_index": 0.8843152466572354 | |
| } | |
| } | |
| Saved outputs to: runs/stage1_anyga_grading_clinical | |
| ``` | |
| ### NV | |
| ```text | |
| Endpoint: nv (Status_nv) | |
| Feature set: grading_clinical | |
| Loaded rows: 2246 | |
| Initial number of features: 6 | |
| Rows after cleaning: 2246 | |
| Split sizes: train=1580, val=221, test=445 | |
| Events: train=181, val=23, test=48 | |
| Features after variance filter: 6 | |
| Features after top-k selection: 6 | |
| Metrics | |
| { | |
| "train": { | |
| "split": "train", | |
| "n": 1580, | |
| "events": 181, | |
| "c_index": 0.8898688423009398 | |
| }, | |
| "val": { | |
| "split": "val", | |
| "n": 221, | |
| "events": 23, | |
| "c_index": 0.8587386548754945 | |
| }, | |
| "test": { | |
| "split": "test", | |
| "n": 445, | |
| "events": 48, | |
| "c_index": 0.8480008751299021 | |
| } | |
| } | |
| Saved outputs to: runs/stage1_nv_grading_clinical | |
| ``` | |
| ## Stage 2 - Deep Clinical | |
| ### Late AMD | |
| ```text | |
| >>> Late AMD: block4 | |
| Endpoint: late_amd (Status_late_amd) | |
| Feature set: deep_clinical | |
| Loaded rows: 2246 | |
| Deep feature sanity check: | |
| shape: (2246, 512) | |
| NaN: 0 | |
| Inf: 0 | |
| min: 0 | |
| max: 23.0515 | |
| mean: 0.513523 | |
| std: 0.945009 | |
| Rows after feature merge: 2246 | |
| Initial number of features: 514 | |
| Rows after cleaning: 2246 | |
| Split sizes: train=1580, val=221, test=445 | |
| Events: train=303, val=40, test=90 | |
| [info] Dropping low-variance features: 14 / 514 | |
| Features after variance filter: 500 | |
| [info] Selected 4 features from LE_DRUS | |
| LE_DRUS_106: score=0.8624, raw_c=0.1376 | |
| LE_DRUS_084: score=0.8620, raw_c=0.1380 | |
| LE_DRUS_125: score=0.8608, raw_c=0.1392 | |
| LE_DRUS_111: score=0.8606, raw_c=0.1394 | |
| [info] Selected 4 features from RE_DRUS | |
| RE_DRUS_084: score=0.8580, raw_c=0.1420 | |
| RE_DRUS_111: score=0.8576, raw_c=0.1424 | |
| RE_DRUS_125: score=0.8573, raw_c=0.1427 | |
| RE_DRUS_106: score=0.8568, raw_c=0.1432 | |
| [info] Selected 4 features from LE_PIG | |
| LE_PIG_013: score=0.8566, raw_c=0.8566 | |
| LE_PIG_066: score=0.8565, raw_c=0.8565 | |
| LE_PIG_042: score=0.8563, raw_c=0.8563 | |
| LE_PIG_125: score=0.8562, raw_c=0.8562 | |
| [info] Selected 4 features from RE_PIG | |
| RE_PIG_013: score=0.8410, raw_c=0.8410 | |
| RE_PIG_042: score=0.8409, raw_c=0.8409 | |
| RE_PIG_006: score=0.8409, raw_c=0.8409 | |
| RE_PIG_125: score=0.8406, raw_c=0.8406 | |
| [info] Block-balanced selection kept 18 / 500 features including 2 non-deep features | |
| Features after block-balanced top-k selection: 18 | |
| Metrics | |
| { | |
| "train": { | |
| "split": "train", | |
| "n": 1580, | |
| "events": 303, | |
| "c_index": 0.8985550550090405 | |
| }, | |
| "val": { | |
| "split": "val", | |
| "n": 221, | |
| "events": 40, | |
| "c_index": 0.8714853929502125 | |
| }, | |
| "test": { | |
| "split": "test", | |
| "n": 445, | |
| "events": 90, | |
| "c_index": 0.887235469903031 | |
| } | |
| } | |
| Saved outputs to: runs_2/stage2_late_amd_deep_clinical_block4_p001 | |
| ``` | |
| ### Any GA | |
| ```text | |
| >>> Any GA: block2 | |
| Endpoint: anyga (Status_anyga) | |
| Feature set: deep_clinical | |
| Loaded rows: 2246 | |
| Deep feature sanity check: | |
| shape: (2246, 512) | |
| NaN: 0 | |
| Inf: 0 | |
| min: 0 | |
| max: 23.0515 | |
| mean: 0.513523 | |
| std: 0.945009 | |
| Rows after feature merge: 2246 | |
| Initial number of features: 514 | |
| Rows after cleaning: 2246 | |
| Split sizes: train=1580, val=221, test=445 | |
| Events: train=188, val=27, test=58 | |
| [info] Dropping low-variance features: 14 / 514 | |
| Features after variance filter: 500 | |
| [info] Selected 2 features from LE_DRUS | |
| LE_DRUS_106: score=0.8300, raw_c=0.1700 | |
| LE_DRUS_125: score=0.8299, raw_c=0.1701 | |
| [info] Selected 2 features from RE_DRUS | |
| RE_DRUS_084: score=0.8279, raw_c=0.1721 | |
| RE_DRUS_111: score=0.8275, raw_c=0.1725 | |
| [info] Selected 2 features from LE_PIG | |
| LE_PIG_066: score=0.8525, raw_c=0.8525 | |
| LE_PIG_013: score=0.8524, raw_c=0.8524 | |
| [info] Selected 2 features from RE_PIG | |
| RE_PIG_006: score=0.8268, raw_c=0.8268 | |
| RE_PIG_042: score=0.8266, raw_c=0.8266 | |
| [info] Block-balanced selection kept 10 / 500 features including 2 non-deep features | |
| Features after block-balanced top-k selection: 10 | |
| Metrics | |
| { | |
| "train": { | |
| "split": "train", | |
| "n": 1580, | |
| "events": 188, | |
| "c_index": 0.8855251789178527 | |
| }, | |
| "val": { | |
| "split": "val", | |
| "n": 221, | |
| "events": 27, | |
| "c_index": 0.8853039543576628 | |
| }, | |
| "test": { | |
| "split": "test", | |
| "n": 445, | |
| "events": 58, | |
| "c_index": 0.8996029754027289 | |
| } | |
| } | |
| Saved outputs to: runs_2/stage2_anyga_deep_clinical_block2_p001 | |
| ``` | |
| ### NV | |
| ```text | |
| >>> NV: block2 | |
| Endpoint: nv (Status_nv) | |
| Feature set: deep_clinical | |
| Loaded rows: 2246 | |
| Deep feature sanity check: | |
| shape: (2246, 512) | |
| NaN: 0 | |
| Inf: 0 | |
| min: 0 | |
| max: 23.0515 | |
| mean: 0.513523 | |
| std: 0.945009 | |
| Rows after feature merge: 2246 | |
| Initial number of features: 514 | |
| Rows after cleaning: 2246 | |
| Split sizes: train=1580, val=221, test=445 | |
| Events: train=181, val=23, test=48 | |
| [info] Dropping low-variance features: 14 / 514 | |
| Features after variance filter: 500 | |
| [info] Selected 2 features from LE_DRUS | |
| LE_DRUS_084: score=0.8713, raw_c=0.1287 | |
| LE_DRUS_106: score=0.8701, raw_c=0.1299 | |
| [info] Selected 2 features from RE_DRUS | |
| RE_DRUS_026: score=0.8624, raw_c=0.1376 | |
| RE_DRUS_041: score=0.8619, raw_c=0.1381 | |
| [info] Selected 2 features from LE_PIG | |
| LE_PIG_114: score=0.8483, raw_c=0.8483 | |
| LE_PIG_082: score=0.8482, raw_c=0.8482 | |
| [info] Selected 2 features from RE_PIG | |
| RE_PIG_066: score=0.8421, raw_c=0.8421 | |
| RE_PIG_013: score=0.8416, raw_c=0.8416 | |
| [info] Block-balanced selection kept 10 / 500 features including 2 non-deep features | |
| Features after block-balanced top-k selection: 10 | |
| Metrics | |
| { | |
| "train": { | |
| "split": "train", | |
| "n": 1580, | |
| "events": 181, | |
| "c_index": 0.8887245688319736 | |
| }, | |
| "val": { | |
| "split": "val", | |
| "n": 221, | |
| "events": 23, | |
| "c_index": 0.8161508028857343 | |
| }, | |
| "test": { | |
| "split": "test", | |
| "n": 445, | |
| "events": 48, | |
| "c_index": 0.8400700103921676 | |
| } | |
| } | |
| Saved outputs to: runs_2/stage2_nv_deep_clinical_block2_p001 | |
| ``` | |