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Browse files- predict_chromosome.py +3 -0
predict_chromosome.py
CHANGED
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@@ -8,6 +8,7 @@ import time
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from tqdm import tqdm
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from tensorflow.keras.models import model_from_json
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from scipy.sparse import csr_matrix, triu
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logger = getLogger(__name__)
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@@ -144,6 +145,7 @@ def predict_and_write(
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names=["anchor1", "anchor2"] + val_cols,
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usecols=["anchor1", "anchor2"] + val_cols,
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) # read chromosome anchor to anchor file
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if "obs" in val_cols and "exp" in val_cols:
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chr_anchor_file["ratio"] = (chr_anchor_file["obs"] + dummy) / (
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chr_anchor_file["exp"] + dummy
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@@ -175,6 +177,7 @@ def predict_and_write(
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chr_tile["anchor2"].values
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) # convert anchor names to column indices
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logger.info(chr_tile)
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sparse_matrix = csr_matrix(
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(chr_tile["ratio"], (rows, cols)),
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shape=(anchor_step, anchor_step),
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from tqdm import tqdm
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from tensorflow.keras.models import model_from_json
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from scipy.sparse import csr_matrix, triu
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import streamlit as st
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logger = getLogger(__name__)
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names=["anchor1", "anchor2"] + val_cols,
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usecols=["anchor1", "anchor2"] + val_cols,
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) # read chromosome anchor to anchor file
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st.dataframe(chr_anchor_file)
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if "obs" in val_cols and "exp" in val_cols:
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chr_anchor_file["ratio"] = (chr_anchor_file["obs"] + dummy) / (
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chr_anchor_file["exp"] + dummy
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chr_tile["anchor2"].values
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) # convert anchor names to column indices
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logger.info(chr_tile)
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st.dataframe(chr_tile)
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sparse_matrix = csr_matrix(
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(chr_tile["ratio"], (rows, cols)),
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shape=(anchor_step, anchor_step),
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