| FROM python:3.11-slim | |
| ENV PYTHONDONTWRITEBYTECODE=1 | |
| ENV PYTHONUNBUFFERED=1 | |
| ENV MCP_TRANSPORT=http | |
| ENV MCP_PORT=7860 | |
| WORKDIR /app | |
| COPY requirements.txt /app/requirements.txt | |
| RUN pip install --no-cache-dir -r /app/requirements.txt | |
| COPY scanpy /app/scanpy | |
| COPY app.py /app/app.py | |
| RUN chown -R appuser:appuser /app | |
| USER appuser | |
| EXPOSE 7860 | |
| CMD ["python", "scanpy/mcp_output/start_mcp.py"] | |