fix(data): #1 update language databases

clinphen_src/data/hpo_synonym_filter.txt

@@ -2239,13 +2239,8 @@ HP:0000679	taurodont
 HP:0000679	chamber elongated large pulp
 HP:0000679	taurodontism
 HP:0000679	taurodontia
-HP:0000680	baby delayed eruption teeth
-HP:0000680	eruption late milk teeth
-HP:0000680	baby eruption late teeth
 HP:0000680	delayed eruption primary teeth
-HP:0000680	deciduous delayed eruption teeth
 HP:0000680	eruption late primary teeth
-HP:0000680	delayed eruption milk teeth
 HP:0000682	abnormality enamel
 HP:0000682	defective enamel tooth
 HP:0000682	dystrophic enamel tooth
@@ -4165,7 +4160,6 @@ HP:0001572	large tooth
 HP:0001572	excess mass tooth
 HP:0001572	megalodontia
 HP:0001574	abnormality integument
-HP:0001579	acth hypercortisolemia independent
 HP:0001579	hypercortisolism primary
 HP:0001580	adrenocortical disease micronodular pigmented
 HP:0001581	infections recurrent skin
@@ -11726,14 +11720,10 @@ HP:0006311	generalised microdontia
 HP:0006311	generalized microdontia
 HP:0006311	all hypotrophy teeth
 HP:0006311	all decreased teeth width
-HP:0006313	deciduous spaced teeth widely
 HP:0006313	primary spaced teeth widely
 HP:0006313	generalized primary spacing teeth
 HP:0006313	generalised primary spacing teeth
-HP:0006313	baby between gaps teeth wide
 HP:0006313	between gaps primary teeth wide
-HP:0006313	milk spaced teeth widely
-HP:0006313	baby spaced teeth widely
 HP:0006315	incisor maxillary midline single
 HP:0006315	central incisor maxillary median solitary syndrome
 HP:0006315	central incisor maxillary median solitary
@@ -11756,15 +11746,9 @@ HP:0006321	adult eruption failure multiple teeth
 HP:0006321	erupting multiple non secondary teeth
 HP:0006321	erupting multiple non permanent teeth
 HP:0006321	multiple permanent teeth unerupted
-HP:0006323	deciduous exfoliation premature teeth
 HP:0006323	early loss primary teeth
-HP:0006323	deciduous early loss teeth
 HP:0006323	exfoliation premature primary teeth
-HP:0006323	baby early loss teeth
-HP:0006323	deciduous loss premature tooth
-HP:0006323	deciduous loss premature teeth
 HP:0006323	loss premature primary teeth
-HP:0006323	baby loss premature teeth
 HP:0006326	due mucopolysaccharidoses teeth to unerupted
 HP:0006326	due impacted mucopolysaccharidoses teeth to
 HP:0006326	due eruption failure mucopolysaccharidoses to tooth
@@ -11797,32 +11781,15 @@ HP:0006333	crowded incisors maxillary
 HP:0006333	incisors maxillary overlapped
 HP:0006333	crowded incisors upper
 HP:0006334	primary small teeth
-HP:0006334	baby teeth underdevelopment
 HP:0006334	decreased primary size teeth
-HP:0006334	baby decreased size teeth
-HP:0006334	baby small teeth
-HP:0006334	milk teeth underdevelopment
 HP:0006334	hypoplasia primary teeth
-HP:0006334	milk small teeth
 HP:0006334	primary teeth underdevelopment
-HP:0006334	deciduous decreased size teeth
-HP:0006334	deciduous hypoplastic teeth
-HP:0006334	decreased milk size teeth
-HP:0006335	deciduous retention teeth
 HP:0006335	delayed loss primary teeth
-HP:0006335	deciduous persistence teeth
-HP:0006335	baby delayed loss teeth
 HP:0006335	exfoliate failure primary teeth to
-HP:0006335	baby retained teeth
-HP:0006335	deciduous exfoliate failure teeth to
 HP:0006335	persistent primary teeth
-HP:0006335	deciduous delayed loss teeth
 HP:0006335	primary retained teeth
-HP:0006335	deciduous retained teeth
-HP:0006335	baby failure lose teeth to
 HP:0006335	dentition persistent primary
 HP:0006335	persistence primary teeth
-HP:0006335	deciduous dentition persistent
 HP:0006336	dental root short
 HP:0006336	rhizomicry
 HP:0006336	decreased dental length roots
@@ -11859,20 +11826,13 @@ HP:0006342	cone incisors lateral shaped upper
 HP:0006342	incisors lateral maxillary peg shaped
 HP:0006342	peg shaped tooth
 HP:0006342	conoid incisors lateral upper
-HP:0006344	abnormality deciduous molar morphology
 HP:0006344	abnormality molar morphology primary
-HP:0006344	abnormality baby molar shape
 HP:0006344	abnormality molar primary shape
 HP:0006346	front screwdriver shaped teeth
 HP:0006346	incisors screwdriver shaped
-HP:0006347	deciduous decreased teeth width
-HP:0006347	baby decreased teeth width
 HP:0006347	decreased primary tooth width
 HP:0006347	decreased primary size tooth
 HP:0006347	microdontia primary teeth
-HP:0006347	deciduous microdontia teeth
-HP:0006347	decreased milk teeth width
-HP:0006347	deciduous small teeth
 HP:0006349	agenesis dentition permanent
 HP:0006349	development failure permanent teeth
 HP:0006349	development failure secondary teeth
@@ -12074,9 +12034,6 @@ HP:0006480	loss premature teeth
 HP:0006480	early loss tooth
 HP:0006480	exfoliation premature teeth
 HP:0006480	loss premature tooth
-HP:0006481	abnormality baby teeth
-HP:0006481	abnormality milk teeth
-HP:0006481	abnormality deciduous teeth
 HP:0006481	abnormality primary teeth
 HP:0006482	dental malformations
 HP:0006482	misshapened teeth
@@ -13707,6 +13664,7 @@ HP:0008002	abnormality macular pigmentation
 HP:0008002	changes macular pigmentary
 HP:0008003	jerky movements ocular pursuit
 HP:0008003	jerky pursuit smooth
+HP:0008007	glaucoma primary
 HP:0008009	eyelashes row triple
 HP:0008009	eyelashes rows three
 HP:0008011	cornea opacification peripheral
@@ -13963,10 +13921,7 @@ HP:0008204	cell precocious puberty sertoli tumour with
 HP:0008204	cell precocious puberty sertoli tumor with
 HP:0008205	but dependent diabetes insulin ketosis resistant
 HP:0008207	adrenocortical failure primary
-HP:0008207	addison disease
 HP:0008207	adrenal insufficiency primary
-HP:0008207	adrenocortical insufficiency
-HP:0008207	addison disease s
 HP:0008208	enlarged glands parathyroid
 HP:0008208	hyperplasia parathyroid
 HP:0008209	insufficiency ovarian primary
@@ -19729,27 +19684,13 @@ HP:0011045	central incisor maxillary missing permanent
 HP:0011045	central development failure incisor maxillary permanent
 HP:0011045	adult agenesis central incisor maxillary
 HP:0011045	absence front permanent tooth upper
-HP:0011046	agenesis central deciduous incisor maxillary
 HP:0011046	absence central incisor maxillary primary
 HP:0011046	central development failure incisor maxillary primary
-HP:0011046	central deciduous development failure incisor maxillary
-HP:0011046	absence central deciduous incisor maxillary
-HP:0011046	central deciduous incisor maxillary missing
-HP:0011046	front milk missing tooth upper
 HP:0011046	agenesis central incisor maxillary primary
 HP:0011046	central incisor maxillary missing primary
-HP:0011046	absence baby front tooth upper
-HP:0011046	baby front missing tooth upper
-HP:0011047	central incisor lower milk missing tooth
-HP:0011047	agenesis central deciduous incisor lower
 HP:0011047	agenesis central incisor lower primary
-HP:0011047	front lower milk missing tooth
-HP:0011047	absence central deciduous incisor mandibular
 HP:0011047	central development failure incisor mandibular primary
-HP:0011047	central deciduous incisor mandibular missing
 HP:0011047	absence central incisor mandibular primary
-HP:0011047	baby front lower missing tooth
-HP:0011047	central deciduous development failure incisor mandibular
 HP:0011047	central incisor mandibular missing primary
 HP:0011047	front lower missing primary tooth
 HP:0011047	agenesis central incisor mandibular primary
@@ -19763,14 +19704,10 @@ HP:0011048	absence front lower permanent tooth
 HP:0011048	central incisor lower missing permanent
 HP:0011048	central incisor mandibular missing permanent
 HP:0011048	adult central incisor lower missing
-HP:0011049	deciduous incisor lateral maxillary missing
-HP:0011049	absence deciduous incisor lateral maxillary
-HP:0011049	deciduous development failure incisor lateral maxillary
 HP:0011049	agenesis incisor lateral maxillary primary
 HP:0011049	absence incisor lateral maxillary primary
 HP:0011049	incisor lateral maxillary missing primary
 HP:0011049	development failure incisor lateral maxillary primary
-HP:0011049	agenesis deciduous incisor lateral maxillary
 HP:0011050	development failure incisor lateral permanent upper
 HP:0011050	development failure incisor lateral maxillary permanent
 HP:0011050	absence incisor lateral maxillary permanent
@@ -19845,7 +19782,6 @@ HP:0011059	area disease gum limited
 HP:0011059	disease localised periodontal
 HP:0011059	localized periodontitis
 HP:0011059	localised periodontitis
-HP:0011060	baby dentinogenesis imperfecta teeth
 HP:0011060	dentinogenesis imperfecta limited primary teeth to
 HP:0011061	abnormality structure tooth
 HP:0011061	abnormality part tooth
@@ -19938,12 +19874,8 @@ HP:0011081	incisor increased width
 HP:0011081	hypertrophy incisor
 HP:0011082	incisor pointed primary
 HP:0011082	conical incisor primary
-HP:0011082	baby cone front shaped tooth
 HP:0011082	incisor peg primary shaped
-HP:0011082	conical deciduous incisor
-HP:0011082	baby front pointed tooth
 HP:0011082	front primary shark tooth
-HP:0011082	baby front peg shaped tooth
 HP:0011082	conoid incisor primary
 HP:0011083	front shark tooth upper
 HP:0011083	front peg shaped tooth upper
@@ -19960,9 +19892,7 @@ HP:0011085	enamel immature tooth
 HP:0011085	enamel soft tooth
 HP:0011085	dental enamel hypomature
 HP:0011085	soft teeth
-HP:0011086	adult baby dentinogenesis imperfecta teeth
 HP:0011086	dentinogenesis imperfecta permanent primary teeth
-HP:0011086	both dentinogenesis imperfecta sets teeth
 HP:0011087	cusp talon
 HP:0011087	cusps talon
 HP:0011087	cusp extra front inside on tooth
@@ -20808,19 +20738,13 @@ HP:0011449	clonus knee
 HP:0011449	clonus patellar
 HP:0011450	central infection nervous system
 HP:0011450	cns infection unusual
-HP:0011451	circumference head small
-HP:0011451	microcephaly
-HP:0011451	age circumference for gestational head small
 HP:0011451	microcephaly primary
 HP:0011451	at birth circumference head present small
-HP:0011451	head small
 HP:0011451	at birth head present small
 HP:0011451	at birth circumference decreased head present
 HP:0011451	at birth cranium present small
-HP:0011451	circumference decreased head
 HP:0011451	at birth microcephaly present
 HP:0011451	at birth present skull small
-HP:0011451	skull small
 HP:0011452	abnormality ear functional middle
 HP:0011453	abnormality incus
 HP:0011454	abnormality malleus
@@ -22193,21 +22117,12 @@ HP:0012222	arachnoid hemangiomatosis
 HP:0012223	ruptured spleen
 HP:0012223	rupture splenic
 HP:0012224	circulating complexes immune
-HP:0012225	deciduous development failure some teeth
-HP:0012225	decreased milk number teeth
 HP:0012225	decreased number primary teeth
 HP:0012225	oligodontia primary teeth
-HP:0012225	baby decreased number teeth
-HP:0012225	deciduous fewer normal teeth than
-HP:0012225	anodontia deciduous partial teeth
 HP:0012225	fewer normal primary teeth than
-HP:0012225	baby missing some teeth
-HP:0012225	milk missing some teeth
 HP:0012225	missing primary some teeth
-HP:0012225	baby fewer normal teeth than
 HP:0012225	anodontia partial primary teeth
 HP:0012225	development failure primary some teeth
-HP:0012225	deciduous decreased number teeth
 HP:0012226	ovarian teratoma
 HP:0012227	stricture urethral
 HP:0012228	headache tension type
@@ -22532,8 +22447,6 @@ HP:0012411	growth hair premature pubic
 HP:0012411	premature pubarche
 HP:0012412	adrenarche premature
 HP:0012413	incisor primary syphilitic
-HP:0012413	deciduous front notched tooth
-HP:0012413	baby front notched tooth
 HP:0012413	front notched primary tooth
 HP:0012413	central incisor notched primary
 HP:0012414	atrophy duodenal
@@ -34344,13 +34257,8 @@ HP:0200158	development failure incisor lateral mandibular permanent
 HP:0200158	absence adult incisor lateral mandibular
 HP:0200158	absence incisor lateral mandibular permanent
 HP:0200159	incisor lateral mandibular missing primary
-HP:0200159	deciduous incisor lateral mandibular missing
-HP:0200159	deciduous development failure incisor lateral mandibular
 HP:0200159	absence incisor lateral mandibular primary
-HP:0200159	absence baby front lower tooth
-HP:0200159	agenesis deciduous incisor lateral mandibular
 HP:0200159	development failure incisor lateral mandibular primary
-HP:0200159	absence deciduous incisor lateral mandibular
 HP:0200159	agenesis incisor lateral mandibular primary
 HP:0200160	absence incisor maxillary
 HP:0200160	absence front tooth upper

data/fr_abbreviations.json

@@ -1 +1 @@
-{}
+{"AAA": "anévrisme de l'aorte abdominale", "AAG": "asthme aigu grave", "AAS": "Syndrome Aarskog-Scott", "ABCD": "absence bilatérale des canaux déférents", "ACH": "hypoplasie cérébelleuse atrophique", "ACTH": "hormone adrénocorticotrope", "ACPA": "puce d'hybridation génomique comparative", "ADHD": "trouble d'hyperactivité avec déficit de l'attention", "ADK": "carcinome", "AIT": "accident ischémique transitoire", "ALAT": "alanine aminotransférase", "ANPAA": "Association Nationale de Prévention en Alcoologie et Addictologie", "AOMI": "artériopathie oblitérante des membres inférieurs", "ARCF": "anomalie du rythme cardiarque foetal", "ASAT": "aspartate aminotransférase", "ASD": "trouble du spectre de l'autisme", "AVC": "Accident vasculaire cérébral", "AVS": "Aide à la vie scolaire", "BAV": "bloc atrio-ventriculaire", "BPCO": "Bronchopneumopathie chronique obstructive", "CATTP": "Centre d’accueil à temps partiel thérapeutique", "CCR": "cancer colorectal", "CGH": "puce d'hybridation génomique comparative", "CHU": "Centre hospitalier universitaire", "CN": "clarté nuchal", "CNV": "variantion du nombre de copie", "COPD": "bronchopneumopathie chronique obstructive", "CP": "pericmètre crânien", "CPDPN": "Centre Pluridisciplinaire de Diagnostic Prénatal", "CRA": "Centre Ressources Autisme", "CRIU": "retard de croissance intrautérin", "CRP": "protéine C-réactive", "DCP": "dyskinésie ciliaire primitive", "DFT": "démence frontotemporale", "DGCR": "region critique du syndrome de DiGeorge", "DMLA": "dégénérescence maculaire liée à l'âge", "DMO": "densité minérale osseuse", "DNID": "diabète non insulinodépendant", "DPI": "diagnostic pré-implentatoire", "DPN": "diagnostic prénatal", "DPNI": "depistage prénatal non invasif", "DSD": "trouble de la différentiation sexuelle", "DT1": "diabète de type 1", "DT2": "diabète de type 2", "DYS": "Troubles cognitifs spécifiques et les troubles des apprentissages qu'ils induisent", "EAL": "bilan lipidique", "ECG": "électrocardiogramme", "EDTA": "Éthylènediaminetétraacétique", "EHPAD": "Etablissement d’Hébergement pour Personnes Agées Dépendantes", "EMI": "Institut Médico-Educatif", "ESAT": "Etablissement et Service d’Aides par le Travail", "ETP": "Education Thérapeutique du Patient", "FAM": "Foyer d'accueil médicalisé", "FCS": "fausse couche spontannée", "FISH": "Hybridation in situ avec epifluorescence", "FIV": "Fécondation invitro", "FOP": "foramen ovale perméable", "FSH": "hormone folliculo-stimulante", "FXPOI": "insuffisance ovarienne précoce liée à l’X fragile", "FXTAS": "syndrome tremblement/ataxie associé à l'X fragile", "GAJ": "glycémie à jeun", "GH": "hormone de croissance", "GNRH": "hormone de libération des gonadotrophines hypophysaires", "HAD": "Hospitalisation à domicile", "HDJ": "Hospitalisation de jour", "HTA": "Hypertension artérielle", "HTAP": "hypertension pulmonaire", "HTIC": "hypertension intracrânienne", "IDM": "Infractus du myocarde", "IME": "Institut Médico-Educatif", "IMG": "Interruption médicale de grossesse", "INR": "International Normalized Ratio", "IRC": "Insuffisance rénale chronique", "IRM": "Imagerie de résonance magnétique", "ITQ": "QIT", "IU": "infection urinaire", "IUGR": "retard de croissance intrautérin", "IV": "intraveineuse", "IVG": "Interruption volontaire de grossesse", "LH": "hormone lutéinisante", "MAS": "Maison d’accueil Spécialisée", "MFIU": "mort fœtale in utero", "MICI": "maladies inflammatoires chroniques de l'intestin", "MMR": "Réparation des mésappariements", "MODY": "Diabète de type MODY", "MPR": "Médecine physique et de réadaptation", "MSI": "instabilité des microsatellites", "NEM": "néoplasie endocrinienne multiple", "NFS": "numeration formule sanguine", "OAP": "œdème aigu du poumon", "OGE": "organes génitaux externes", "OMI": "œdème des membres inférieurs", "ORL": "Oto-rhino-laryngologiste", "PAF": "polypose adénomateuse familiale", "PC": "périmètre crânien", "PCN": "périmètre crânien de naissance", "PCR": "réaction de polymérisation en chaîne", "PKRD": "polykystose rénale autosomique dominante", "PMI": "Protection maternelle et infantile", "PN": "poids de naissance", "PO": "per os", "POCS": "Syndrome des pointes ondes continues du sommeil", "POF": "foramen ovale perméable", "PTG": "prothèse totale de genou", "QI": "quotient intellectuel", "QIT": "quotient intellectuel total", "RCIU": "retard de croissance intrautérin", "RCP": "Reunion de Concertation pluridisciplinaire", "RDPM": "retard de developpement psychomoteur", "ROT": "reflexes osteo-tendineux", "RT": "transcription inverse", "SAHS": "syndrome d'apnées/hypopnée du sommeil", "SAMU": "service d'aide médicale urgente", "SDRA": "syndrome de détresse respiratoire aiguë", "SEP": "Sclérose En Plaques", "SESSAD": "Service d’Education Spéciale et de Soins à Domicile", "SIADH": "syndrome de sécrétion inappropriée d'hormone anti-diurétique", "SOPK": "syndrome des ovaires polykystiques", "SPW": "syndrome de Prader-Willi", "SSR": "Soins de Suite et de Réadaptation", "STB": "Sclérose tubéreuse de Bourneville", "TAVI": "Implantation percutanée d'une prothèse valvulaire aortique", "TC": "traumatisme crânien", "TDA": "Trouble de déficit de l'attention avec ou sans hyperactivité", "TDAH": "Trouble de déficit de l'attention avec ou sans hyperactivité", "TDM": "tomodensitométrie", "TED": "Trouble envahissant du développement", "TEP": "tomographie par émission de positon", "TN": "taille de naissance", "TP": "taux de prothrombine", "TSA": "trouble de spectre de l'autisme", "TSH": "thyréostimuline", "TSLA ": "Trouble spécifique des apprentissages et du langage", "TSLO": "trouble spécifique du langage oral", "TTT": "traitement", "UGD": "ulcère gastroduodénal", "UHCD": "unité d'hospitalisation de courte durée", "USI": "unité de soins intensifs", "VD": "ventricule droite", "VG": "ventricule gauche", "WB": "western blot", "AEEH": "Allocation d'éducation de l'enfant handicapé", "CLIS": "Classe pour l'inclusion scolaire", "ULIS": "Unités localisées pour l'inclusion scolaire"}

data/fr_abbreviations_translation.json

@@ -1 +1 @@
-{}
+{"abdominal aorta aneurysm": "abdominal aortic aneurysm", "severe acute asthma": "Status asthmaticus", "Aarskog-Scott Syndrome ": "Aarskog-Scott syndrome", "bilateral absence of deferent channels": "Absent vas deferens", "atrophic cerebellar hypoplasia": "Atrophic cerebellar hypoplasia", "adrenocorticotropic hormone": "adrenocorticotropic hormone", "comparative genomic hybridization chip": "comparative genomic hybridization", "Hyperactivity disorder with attention deficit": "attention deficit hyperactivity disorder", "carcinoma": "carcinoma", "transient ischemic accident": "transient ischemic attack", "alanine aminotransferase": "alanine aminotransferase", "Association Nationale de Prevention en Alcoologie et Addictologie": "National association for treating addictive behavior", "obliterating arteriopathy of the lower limbs": "Inflammatory arteriopathy", "anomaly of the fetal cardiorrhythmia": "fetal distress", "aspartate aminotransferase": "aspartate aminotransferase", "autism spectrum disorder": "autism", "Stroke": "Stroke", "Support for school life": "school life assistance", "Atrioventricular block": "Atrioventricular block", "Chronic obstructive bronchopneumopathy": "Chronic pulmonary obstruction", "Part-time therapeutic reception centre": "Part-time Therapeutic Reception Centre", "colorectal cancer": "colorectal cancer", "University Hospital Centre": "University Hospital Center", "nuchal clarity": "nuchal skin", "variation of the number of copies": "copy nulmber variation", "Cranial pericmeter": "head circumference", "Multidisciplinary Centre for Prenatal Diagnostics": "Pluridisciplinary Center for Prenatal Diagnosis", "Autism Resource Centre": "Autism Resource Center for autistic behavior", "retardation of intrauterine growth": "intrauterin growth retardation", "C-reactive protein": "C-reactive protein", "primitive ciliary dyskinesia": "ciliary dyskinesia", "Frontotemporal dementia": "Frontotemporal dementia", "DiGeorge syndrome critical region": "diGeorge chromosomal region", "age-related macular degeneration": "age-related macular degeneration", "bone mineral density": "bone mineral density", "non-insulin-dependent diabetes mellitus": "type II diabetes mellitus", "pre-implentatory diagnosis": "pre-implantation diagnosis", "prenatal diagnosis": "prenatal diagnosis", "Non-invasive prenatal screening": "non-invasive prenatal testing", "disorder of sexual differentiation": "disorders of sex development", "type 1 diabetes": "Insulin-resistant diabetes mellitus", "type 2 diabetes": "type II diabetes mellitus", "Specific cognitive disorders and learning disorders they induce": "specific learning disabilities", "lipid balance": "lipid test", "electrocardiogram": "electrocardiogram", "Ethylenediaminetetraacetic": "Ethylenediaminetetraacetic acid", "Housing for Self-employed persons": "Elderly Dependent Care Accommodation", "Medical-Educational Institute": "medical-educational institute", "Establishment and Service of Labour Aids": "establishment and service of help by work", "Patient Therapeutic Education": "Therapeutic Education for the Patient", "Medically assisted foster home ": "medical home for neurodevelopmental delay", "Spontaneous miscarriage": "Miscarriage", "In situ hybridization with epifluorescence": "Fluorescent In Situ Hybridization", "Invitro fertilization": "Fécondation invitro", "permeable oval foramen": "patent foramen ovale", "follicle-stimulating hormone": "follicle-stimulating hormone", "Early ovarian failure due to fragile X": "Fragile X-Associated Primary Ovarian Insufficiency", "tremor/ataxia syndrome associated with fragile X": "Fragile X Tremor Ataxia Syndrome", "fasting blood glucose levels": "fasting blood glucose", "growth hormone": "growth hormone", "pituitary gonadotrophin release hormone": "Gonadotropin Releasing Hormone", "Home Hospitalization": "Home hospitalisation", "Day hospitalization": "day hospital admissions", "Hypertension": "high blood pressure", "pulmonary hypertension": "Pulmonary arterial hypertension", "intracranial hypertension": "Increased intracranial pressure", "Myocardial infractions": "myocardial infarction", "Medical termination of pregnancy": "Medical Termination Of Pregnancy", "International Normalized Ratio": "International Normalized Ratio", "Chronic renal failure": "chronic kidney disease", "Magnetic resonance imaging": "Magnetic resonance imaging", "QIT": "FSIQ", "urinary tract infection": "urinary tract infection", "intravenous": "intravenous", "Voluntary termination of pregnancy": "Voluntary termination of pregnancy", "luteinizing hormone": "luteinizing hormone", "Specialised Home": "medical home for neurodevelopmental delay", "fetal death in utero": "Stillbirth", "chronic inflammatory diseases of the intestine": "Inflammatory bowel disease", "Repair of mismatches": "mismatch repair", "MODY type diabetes": "maturity onset diabetes of the young", "Physical medicine and rehabilitation": "Physical Medicine and Rehabilitation", "Microsatellite instability": "microsatellite instability", "multiple endocrine neoplasia": "Multiple endocrine neoplasia", "Numbering of blood formula": "numeration formule sanguine", "acute oedema of the lung": "Pulmonary edema", "external genital organs": "external genitals", "oedema of the lower limbs": "Pedal edema", "Oto-rhino-laryngologist": "otolaryngologist", "family adenomatous polyposia": "Familial adenomatous polyposis", "Cranial perimeter": "head circumference", "Cranial perimeter of birth": "head circumference at birth", "polymerization chain reaction": "polymerase chain reaction", "autosomal renal polycystosis dominant": "polycystic kidney dysplasia", "Maternal and child protection": "Maternal and child protection", "birth weight": "birth weight", "per os": "per os", "Continuous Sleep Wave Point Syndrome": "Continuous spike and waves during slow sleep", "total knee prosthesis": "Total knee arthroplasty", "intellectual quotient": "IQ", "total intellectual quotient": "FSIQ", "Multidisciplinary Concertation Meeting": "Multidisciplinary Consultation Meeting", "retardation of psychomotor development": "global developmental delay", "osteo-tendinous reflexes": "numeration formule sanguine", "reverse transcription": "reverse transcription", "apnea/sleep hypopnoea syndrome": "Sleep apnea", "emergency medical aid service": "Emergency medical services", "Acute Respiratory Distress Syndrome": "acute respiratory distress syndrome", "Plated Sclerosis": "multiple sclerosis", "Special Education and Home Care Service": "specific education services", "Inappropriate anti-diuretic hormone secretion syndrome": "syndrome of inappropriate anti-diuretic hormone secretion", "Polycystic Ovarian Syndrome": "Polycystic ovary syndrome", "Prader-Willi syndrome": "Prader-Willi syndrome", "Follow-up and Rehabilitation Care": "Follow-up and Rehabilitation Care", "Tuberous sclerosis of Bourneville": "Tuberous sclerosis", "Percutaneous implantation of aortic valve prosthesis": "Transcatheter Aortic Valve Implantation for abnormal aortic valve morphology", "head injury": "head trauma", "Attention deficit disorder with or without hyperactivity": "attention deficit hyperactivity disorder", "CT-modensitometry": "CT-scan", "Invasive development disorder": "autism", "positon emission tomography": "positron emission tomography", "birth size": "birth heigh", "prothrombin level": "Prothrombin Ratio", "thyreostimulin": "thyroid-stimulating hormone", "Specific learning and language problems": "delayed speech and language development", "speech-specific disorder": "delayed speech and language development", "treatment": "treatment", "Gastroduodenal ulcer": "Peptic ulcer", "Short-term hospitalization unit": "short-term hospitalization unit", "intensive care unit": "intensive care unit", "right ventricle": "right ventricle", "left ventricle": "left ventricle", "Western blot": "western blot", "Education allowance for disabled children ": "Disabled Child Education Allowance", "School inclusion class": "school mainstreaming special class", "Localized units for school inclusion": "school mainstreaming special class"}

lf_app.py

@@ -18,7 +18,7 @@ from presidio_anonymizer import AnonymizerEngine
 from presidio_anonymizer.entities import RecognizerResult, OperatorConfig
 import subprocess
 from clinphen_src import get_phenotypes_lf
-
+from unidecode import unidecode
 
 # -- Set page config
 apptitle = "Linguo Franca"
@@ -84,6 +84,10 @@ def get_cities_list():
     for element in list_cities:
         whole_cities_patterns.append(element)
         whole_cities_patterns.append(element.lower().capitalize())
+        whole_cities_patterns.append(element.upper())
+        whole_cities_patterns.append(unidecode(element))
+        whole_cities_patterns.append(unidecode(element).lower().capitalize())
+        whole_cities_patterns.append(unidecode(element).upper())
     del cities
     del list_cities
     return whole_cities_patterns
@@ -525,7 +529,7 @@ def change_name_patient_abbreviations(courrier, nom, prenom, abbreviations_dict)
         "Pr": "Professeur",
     }     
     for key, value in abbreviations_dict.items():
-        dict_correction_name_abbreviations[key] = value
+        dict_correction_name_abbreviations[key] = value# + " [" + key + "]"
     
     list_replaced = []
     splitted_courrier = courrier_name.split()