Spaces:
Sleeping
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api-dashboard
#1
by
Booty-szy - opened
- api.py +85 -51
- app.py +58 -77
- classes.py +0 -37
- ecosystem.config.js +0 -14
- requirements.txt +1 -3
- utils.py +55 -208
api.py
CHANGED
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@@ -2,37 +2,26 @@
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import atexit
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import datetime
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import
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import uvicorn
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from apscheduler.schedulers.background import BackgroundScheduler
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from fastapi import FastAPI
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import utils
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# Global variables (saves time on loading data)
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state_vars = None
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reload_timestamp = datetime.datetime.now().strftime('%D %T')
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data_all = None
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data_30d = None
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data_24h = None
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app = FastAPI()
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def load_data():
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"""
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Reload the state variables
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"""
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global
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data_all = utils.preload_data()
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data_30d = data_all[(pd.Timestamp.now() - data_all['updated_at'].apply(lambda x: pd.Timestamp(x)) < pd.Timedelta('30 days'))]
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data_24h = data_all[(pd.Timestamp.now() - data_all['updated_at'].apply(lambda x: pd.Timestamp(x)) < pd.Timedelta('1 days'))]
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reload_timestamp = datetime.datetime.now().strftime('%D %T')
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print(f'Reloaded data at {reload_timestamp}')
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atexit.register(lambda: scheduler.shutdown())
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@app.
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def home():
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return "Welcome to the Bittensor Protein Folding Leaderboard API!"
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@app.
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def updated():
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return reload_timestamp
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@app.
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"""
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Get the productivity metrics
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"""
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@app.
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def
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"""
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Get the
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"""
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coldkeys = df_miners['coldkey']
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trusts = df_miners['trust'].astype(float).values
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results = {'incentives': incentives,
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'emissions': emissions,
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'identities': identities,
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'hotkeys': hotkeys,
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'coldkeys': coldkeys,
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'trusts': trusts}
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return results
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@app.get("/throughput", response_model=Throughput)
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def throughput_metrics():
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"""
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Get the
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"""
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return utils.get_data_transferred(data_all, data_24h)
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if __name__ == '__main__':
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load_data()
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start_scheduler()
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# to test locally
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import atexit
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import datetime
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from flask import Flask, request, jsonify
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from apscheduler.schedulers.background import BackgroundScheduler
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import utils
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app = Flask(__name__)
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# Global variables (saves time on loading data)
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state_vars = None
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reload_timestamp = datetime.datetime.now().strftime('%D %T')
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def load_data():
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"""
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Reload the state variables
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"""
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global state_vars, reload_timestamp
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state_vars = utils.load_state_vars()
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reload_timestamp = datetime.datetime.now().strftime('%D %T')
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print(f'Reloaded data at {reload_timestamp}')
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atexit.register(lambda: scheduler.shutdown())
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@app.route('/', methods=['GET'])
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def home():
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return "Welcome to the Bittensor Protein Folding Leaderboard API!"
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@app.route('/updated', methods=['GET'])
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def updated():
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return reload_timestamp
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@app.route('/data', methods=['GET'])
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@app.route('/data/<period>', methods=['GET'])
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def data(period=None):
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"""
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Get the productivity metrics
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"""
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assert period in ('24h', None), f"Invalid period: {period}. Must be '24h' or None."
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df = state_vars["dataframe_24h"] if period == '24h' else state_vars["dataframe"]
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return jsonify(
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df.astype(str).to_dict(orient='records')
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)
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@app.route('/productivity', methods=['GET'])
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@app.route('/productivity/<period>', methods=['GET'])
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def productivity_metrics(period=None):
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"""
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Get the productivity metrics
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"""
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assert period in ('24h', None), f"Invalid period: {period}. Must be '24h' or None."
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df = state_vars["dataframe_24h"] if period == '24h' else state_vars["dataframe"]
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return jsonify(
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utils.get_productivity(df)
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)
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@app.route('/throughput', methods=['GET'])
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@app.route('/throughput/<period>', methods=['GET'])
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def throughput_metrics(period=None):
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"""
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Get the throughput metrics
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"""
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assert period in ('24h', None), f"Invalid period: {period}. Must be '24h' or None."
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df = state_vars["dataframe_24h"] if period == '24h' else state_vars["dataframe"]
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return jsonify(utils.get_data_transferred(df))
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@app.route('/metagraph', methods=['GET'])
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def metagraph():
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"""
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Get the metagraph data
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Returns:
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- metagraph_data: List of dicts (from pandas DataFrame)
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"""
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df_m = state_vars["metagraph"]
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return jsonify(
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df_m.to_dict(orient='records')
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)
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@app.route('/leaderboard', methods=['GET'])
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@app.route('/leaderboard/<entity>', methods=['GET'])
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@app.route('/leaderboard/<entity>/<ntop>', methods=['GET'])
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def leaderboard(entity='identity',ntop=10):
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"""
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Get the leaderboard data
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Returns:
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- leaderboard_data: List of dicts (from pandas DataFrame)
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"""
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assert entity in utils.ENTITY_CHOICES, f"Invalid entity choice: {entity}"
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df_miners = utils.get_leaderboard(
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state_vars["metagraph"],
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ntop=int(ntop),
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entity_choice=entity
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)
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return jsonify(
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df_miners.to_dict(orient='records')
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)
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@app.route('/validator', methods=['GET'])
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def validator():
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"""
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Get the validator data
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Returns:
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- validator_data: List of dicts (from pandas DataFrame)
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"""
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df_m = state_vars["metagraph"]
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df_validators = df_m.loc[df_m.validator_trust > 0]
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return jsonify(
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df_validators.to_dict(orient='records')
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)
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if __name__ == '__main__':
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load_data()
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start_scheduler()
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app.run(host='0.0.0.0', port=5001, debug=True)
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# to test locally
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app.py
CHANGED
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import time
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import pandas as pd
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import plotly.express as px
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import requests
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import streamlit as st
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import utils
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"""
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UPDATE_INTERVAL = 3600
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st.title('Folding Subnet Dashboard')
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st.markdown('<br>', unsafe_allow_html=True)
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@st.cache_data(ttl=UPDATE_INTERVAL)
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def fetch_throughput_data():
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return requests.get(f'{BASE_URL}/throughput').json()
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@st.cache_data(ttl=UPDATE_INTERVAL)
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def fetch_leaderboard_data(df_m, ntop, entity_choice):
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return utils.get_leaderboard(df_m, entity_choice=entity_choice)
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#### ------ PRODUCTIVITY ------
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st.subheader('Productivity overview')
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st.info('Productivity metrics show how many proteins have been folded, which is the primary goal of the subnet. Metrics are estimated using weights and biases data combined with heuristics.')
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productivity_24h = productivity_all['last_24h']
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completed_jobs = pd.DataFrame(completed_jobs)
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unique_folded = pd.DataFrame(productivity_all['all_time']['unique_folded_data'])
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# unique_folded['last_event_at'] = pd.to_datetime(unique_folded['updated_at'])
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m1, m2, m3 = st.columns(3)
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m1.metric('Unique proteins folded', f'{
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m2.metric('Total
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m3.metric('Total
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st.markdown('<br>', unsafe_allow_html=True)
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PROD_CHOICES = {
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'Total jobs completed': 'total_pdbs',
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'Unique proteins folded': 'unique_pdbs',
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}
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prod_choice_label = st.radio('Select productivity metric', list(PROD_CHOICES.keys()), index=0, horizontal=True)
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prod_choice = PROD_CHOICES[prod_choice_label]
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PROD_DATA = {
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'unique_pdbs': unique_folded,
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'total_pdbs': completed_jobs,
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}
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df = PROD_DATA[prod_choice]
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df = df.sort_values(by='last_event_at').reset_index()
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# Create a cumulative count column
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df['cumulative_jobs'] = df.index + 1
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# Plot the cumulative jobs over time
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st.plotly_chart(
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use_container_width=True,
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)
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st.markdown('<br>', unsafe_allow_html=True)
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#### ------ THROUGHPUT ------
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st.subheader('Throughput overview')
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st.info('Throughput metrics show the total amount of data sent and received by the validators. This is a measure of the network activity and the amount of data that is being processed by the subnet.')
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MEM_UNIT = 'GB' #st.radio('Select memory unit', ['TB','GB', 'MB'], index=0, horizontal=True)
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throughput = fetch_throughput_data()
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data_transferred =
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data_transferred_24h =
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data_df = pd.DataFrame(throughput['data'])
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data_df = data_df.sort_values(by='updated_at').reset_index()
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data_df['updated_at'] = pd.to_datetime(data_df['updated_at'])
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data_df['Total validator data sent'] = data_df['md_inputs_sum'].cumsum()
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data_df['Total received data'] = data_df['md_outputs_sum'].cumsum()
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m1, m2, m3 = st.columns(3)
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m1.metric(f'Total
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m2.metric(f'Total received data ({MEM_UNIT})', f'{data_transferred
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m3.metric(f'Total transferred data ({MEM_UNIT})', f'{data_transferred
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st.plotly_chart(
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px.
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labels={'
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yanchor="top",
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y=0.99,
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xanchor="left",
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x=0.01
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)),
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use_container_width=True,
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)
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st.markdown('<br>', unsafe_allow_html=True)
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#### ------ LEADERBOARD ------
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st.subheader('Leaderboard')
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ntop = m1.slider('Number of top miners to display', value=10, min_value=3, max_value=50, step=1)
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entity_choice = m2.radio('Select entity', utils.ENTITY_CHOICES, index=0, horizontal=True)
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df_m =
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df_miners =
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# hide colorbar and don't show y axis
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st.plotly_chart(
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px.bar(df_miners
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labels={'I':'Incentive', 'trust':'Trust', 'stake':'Stake', '_index':'Rank'},
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).update_layout(coloraxis_showscale=False, yaxis_visible=False),
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use_container_width=True,
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)
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with st.expander('Show raw metagraph data'):
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st.dataframe(df_m)
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st.markdown('<br>', unsafe_allow_html=True)
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#### ------ LOGGED RUNS ------
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import time
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import pandas as pd
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import streamlit as st
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import plotly.express as px
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import utils
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"""
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UPDATE_INTERVAL = 3600
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st.title('Folding Subnet Dashboard')
|
| 20 |
st.markdown('<br>', unsafe_allow_html=True)
|
| 21 |
|
| 22 |
+
# reload data periodically
|
| 23 |
+
df = utils.build_data(time.time()//UPDATE_INTERVAL)
|
| 24 |
+
st.toast(f'Loaded {len(df)} runs')
|
|
|
|
|
|
|
|
|
|
|
|
|
| 25 |
|
| 26 |
+
# TODO: fix the factor for 24 hours ago
|
| 27 |
+
runs_alive_24h_ago = (df.last_event_at > pd.Timestamp.now() - pd.Timedelta('1d'))
|
| 28 |
+
df_24h = df.loc[runs_alive_24h_ago]
|
| 29 |
+
# correction factor to account for the fact that the data straddles the 24h boundary
|
| 30 |
+
# correction factor is based on the fraction of the run which occurred in the last 24h
|
| 31 |
+
# factor = (df_24h.last_event_at - pd.Timestamp.now() + pd.Timedelta('1d')) / pd.Timedelta('1d')
|
| 32 |
|
|
|
|
|
|
|
|
|
|
| 33 |
|
| 34 |
#### ------ PRODUCTIVITY ------
|
| 35 |
|
|
|
|
| 37 |
st.subheader('Productivity overview')
|
| 38 |
st.info('Productivity metrics show how many proteins have been folded, which is the primary goal of the subnet. Metrics are estimated using weights and biases data combined with heuristics.')
|
| 39 |
|
| 40 |
+
productivity = utils.get_productivity(df)
|
| 41 |
+
productivity_24h = utils.get_productivity(df_24h)
|
|
|
|
|
|
|
|
|
|
| 42 |
|
|
|
|
|
|
|
| 43 |
|
| 44 |
m1, m2, m3 = st.columns(3)
|
| 45 |
+
m1.metric('Unique proteins folded', f'{productivity.get("unique_folded"):,.0f}', delta=f'{productivity_24h.get("unique_folded"):,.0f} (24h)')
|
| 46 |
+
m2.metric('Total proteins folded', f'{productivity.get("total_simulations"):,.0f}', delta=f'{productivity_24h.get("total_simulations"):,.0f} (24h)')
|
| 47 |
+
m3.metric('Total simulation steps', f'{productivity.get("total_md_steps"):,.0f}', delta=f'{productivity_24h.get("total_md_steps"):,.0f} (24h)')
|
| 48 |
+
|
| 49 |
st.markdown('<br>', unsafe_allow_html=True)
|
| 50 |
|
| 51 |
+
time_binned_data = df.set_index('last_event_at').groupby(pd.Grouper(freq='12h'))
|
| 52 |
+
|
| 53 |
PROD_CHOICES = {
|
|
|
|
| 54 |
'Unique proteins folded': 'unique_pdbs',
|
| 55 |
+
'Total simulations': 'total_pdbs',
|
| 56 |
+
'Total simulation steps': 'total_md_steps',
|
| 57 |
}
|
|
|
|
| 58 |
prod_choice_label = st.radio('Select productivity metric', list(PROD_CHOICES.keys()), index=0, horizontal=True)
|
| 59 |
prod_choice = PROD_CHOICES[prod_choice_label]
|
| 60 |
+
steps_running_total = time_binned_data[prod_choice].sum().cumsum()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 61 |
st.plotly_chart(
|
| 62 |
+
# add fillgradient to make it easier to see the trend
|
| 63 |
+
px.area(steps_running_total, y=prod_choice,
|
| 64 |
+
labels={'last_event_at':'', prod_choice: prod_choice_label},
|
| 65 |
+
).update_traces(fill='tozeroy'),
|
| 66 |
use_container_width=True,
|
| 67 |
)
|
| 68 |
|
| 69 |
st.markdown('<br>', unsafe_allow_html=True)
|
| 70 |
|
| 71 |
+
|
| 72 |
#### ------ THROUGHPUT ------
|
| 73 |
st.subheader('Throughput overview')
|
| 74 |
|
| 75 |
st.info('Throughput metrics show the total amount of data sent and received by the validators. This is a measure of the network activity and the amount of data that is being processed by the subnet.')
|
| 76 |
|
| 77 |
MEM_UNIT = 'GB' #st.radio('Select memory unit', ['TB','GB', 'MB'], index=0, horizontal=True)
|
|
|
|
| 78 |
|
| 79 |
+
data_transferred = utils.get_data_transferred(df,unit=MEM_UNIT)
|
| 80 |
+
data_transferred_24h = utils.get_data_transferred(df_24h, unit=MEM_UNIT)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 81 |
|
| 82 |
m1, m2, m3 = st.columns(3)
|
| 83 |
+
m1.metric(f'Total sent data ({MEM_UNIT})', f'{data_transferred.get("sent"):,.0f}', delta=f'{data_transferred_24h.get("sent"):,.0f} (24h)')
|
| 84 |
+
m2.metric(f'Total received data ({MEM_UNIT})', f'{data_transferred.get("received"):,.0f}', delta=f'{data_transferred_24h.get("received"):,.0f} (24h)')
|
| 85 |
+
m3.metric(f'Total transferred data ({MEM_UNIT})', f'{data_transferred.get("total"):,.0f}', delta=f'{data_transferred_24h.get("total"):,.0f} (24h)')
|
| 86 |
+
|
| 87 |
+
|
| 88 |
+
IO_CHOICES = {'total_data_sent':'Sent', 'total_data_received':'Received'}
|
| 89 |
+
io_running_total = time_binned_data[list(IO_CHOICES.keys())].sum().rename(columns=IO_CHOICES).cumsum().melt(ignore_index=False)
|
| 90 |
+
io_running_total['value'] = io_running_total['value'].apply(utils.convert_unit, args=(utils.BASE_UNITS, MEM_UNIT))
|
| 91 |
|
| 92 |
st.plotly_chart(
|
| 93 |
+
px.area(io_running_total, y='value', color='variable',
|
| 94 |
+
labels={'last_event_at':'', 'value': f'Data transferred ({MEM_UNIT})', 'variable':'Direction'},
|
| 95 |
+
),
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 96 |
use_container_width=True,
|
| 97 |
)
|
| 98 |
|
| 99 |
st.markdown('<br>', unsafe_allow_html=True)
|
| 100 |
|
| 101 |
+
|
| 102 |
#### ------ LEADERBOARD ------
|
| 103 |
|
| 104 |
st.subheader('Leaderboard')
|
|
|
|
| 107 |
ntop = m1.slider('Number of top miners to display', value=10, min_value=3, max_value=50, step=1)
|
| 108 |
entity_choice = m2.radio('Select entity', utils.ENTITY_CHOICES, index=0, horizontal=True)
|
| 109 |
|
| 110 |
+
df_m = utils.get_metagraph(time.time()//UPDATE_INTERVAL)
|
| 111 |
+
df_miners = utils.get_leaderboard(df_m, ntop=ntop, entity_choice=entity_choice)
|
| 112 |
+
|
| 113 |
# hide colorbar and don't show y axis
|
| 114 |
st.plotly_chart(
|
| 115 |
+
px.bar(df_miners, x='I', color='I', hover_name=entity_choice, text=entity_choice if ntop < 20 else None,
|
| 116 |
labels={'I':'Incentive', 'trust':'Trust', 'stake':'Stake', '_index':'Rank'},
|
| 117 |
).update_layout(coloraxis_showscale=False, yaxis_visible=False),
|
| 118 |
use_container_width=True,
|
| 119 |
)
|
| 120 |
|
| 121 |
+
|
| 122 |
with st.expander('Show raw metagraph data'):
|
| 123 |
st.dataframe(df_m)
|
| 124 |
|
| 125 |
st.markdown('<br>', unsafe_allow_html=True)
|
| 126 |
|
| 127 |
+
|
| 128 |
#### ------ LOGGED RUNS ------
|
| 129 |
|
| 130 |
+
st.subheader('Logged runs')
|
| 131 |
+
st.info('The timeline shows the creation and last event time of each run.')
|
| 132 |
+
st.plotly_chart(
|
| 133 |
+
px.timeline(df, x_start='created_at', x_end='last_event_at', y='username', color='state',
|
| 134 |
+
labels={'created_at':'Created at', 'last_event_at':'Last event at', 'username':''},
|
| 135 |
+
),
|
| 136 |
+
use_container_width=True
|
| 137 |
+
)
|
| 138 |
+
|
| 139 |
+
with st.expander('Show raw run data'):
|
| 140 |
+
st.dataframe(df)
|
classes.py
DELETED
|
@@ -1,37 +0,0 @@
|
|
| 1 |
-
from pydantic import BaseModel
|
| 2 |
-
from datetime import datetime
|
| 3 |
-
from typing import List
|
| 4 |
-
|
| 5 |
-
|
| 6 |
-
class Data(BaseModel):
|
| 7 |
-
last_event_at: List[datetime]
|
| 8 |
-
cumulative_jobs: List[int]
|
| 9 |
-
|
| 10 |
-
class ProductivityData(BaseModel):
|
| 11 |
-
unique_folded: int
|
| 12 |
-
total_completed_jobs: int
|
| 13 |
-
unique_folded_data: Data
|
| 14 |
-
total_completed_jobs_data: Data
|
| 15 |
-
|
| 16 |
-
|
| 17 |
-
class Productivity(BaseModel):
|
| 18 |
-
all_time: ProductivityData
|
| 19 |
-
last_24h: ProductivityData
|
| 20 |
-
last_30d: ProductivityData
|
| 21 |
-
|
| 22 |
-
class ThroughputData(BaseModel):
|
| 23 |
-
validator_sent: float
|
| 24 |
-
miner_sent: float
|
| 25 |
-
|
| 26 |
-
class Throughput(BaseModel):
|
| 27 |
-
all_time: ThroughputData
|
| 28 |
-
last_24h: ThroughputData
|
| 29 |
-
data: dict
|
| 30 |
-
|
| 31 |
-
class Metagraph(BaseModel):
|
| 32 |
-
incentives: List[float]
|
| 33 |
-
emissions: List[float]
|
| 34 |
-
identities: List[str]
|
| 35 |
-
hotkeys: List[str]
|
| 36 |
-
coldkeys: List[str]
|
| 37 |
-
trusts: List[float]
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
ecosystem.config.js
DELETED
|
@@ -1,14 +0,0 @@
|
|
| 1 |
-
module.exports = {
|
| 2 |
-
apps: [
|
| 3 |
-
{
|
| 4 |
-
name: 'hf-dashboard-api',
|
| 5 |
-
script: '/home/spunion/Sn25/api.py',
|
| 6 |
-
interpreter: '/home/spunion/Sn25/venv/bin/python',
|
| 7 |
-
autorestart: true,
|
| 8 |
-
watch: false,
|
| 9 |
-
env: {
|
| 10 |
-
NODE_ENV: 'production',
|
| 11 |
-
},
|
| 12 |
-
},
|
| 13 |
-
],
|
| 14 |
-
};
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
requirements.txt
CHANGED
|
@@ -7,7 +7,5 @@ streamlit
|
|
| 7 |
nbformat
|
| 8 |
plotly
|
| 9 |
pandas
|
| 10 |
-
|
| 11 |
-
fastapi
|
| 12 |
-
uvicorn
|
| 13 |
|
|
|
|
| 7 |
nbformat
|
| 8 |
plotly
|
| 9 |
pandas
|
| 10 |
+
flask
|
|
|
|
|
|
|
| 11 |
|
utils.py
CHANGED
|
@@ -1,13 +1,12 @@
|
|
| 1 |
-
import json
|
| 2 |
import os
|
| 3 |
-
import time
|
| 4 |
-
|
| 5 |
-
import bittensor as bt
|
| 6 |
-
import numpy as np
|
| 7 |
-
import pandas as pd
|
| 8 |
-
import streamlit as st
|
| 9 |
import tqdm
|
|
|
|
| 10 |
import wandb
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 11 |
# TODO: Store the runs dataframe (as in sn1 dashboard) and top up with the ones created since the last snapshot
|
| 12 |
# TODO: Store relevant wandb data in a database for faster access
|
| 13 |
|
|
@@ -16,7 +15,7 @@ import wandb
|
|
| 16 |
MIN_STEPS = 12 # minimum number of steps in wandb run in order to be worth analyzing
|
| 17 |
MAX_RUNS = 100#0000
|
| 18 |
NETUID = 25
|
| 19 |
-
|
| 20 |
NETWORK = 'finney'
|
| 21 |
KEYS = None
|
| 22 |
ABBREV_CHARS = 8
|
|
@@ -24,12 +23,7 @@ ENTITY_CHOICES = ('identity', 'hotkey', 'coldkey')
|
|
| 24 |
|
| 25 |
PDBS_PER_RUN_STEP = 0.083
|
| 26 |
AVG_MD_STEPS = 30_000
|
| 27 |
-
BASE_UNITS = '
|
| 28 |
-
SAVE_PATH = 'current_runs/'
|
| 29 |
-
# Check if the directory exists
|
| 30 |
-
if not os.path.exists(SAVE_PATH):
|
| 31 |
-
# If it doesn't exist, create the directory
|
| 32 |
-
os.makedirs(SAVE_PATH)
|
| 33 |
|
| 34 |
api = wandb.Api(timeout=120, api_key='cdcbe340bb7937d3a289d39632491d12b39231b7')
|
| 35 |
|
|
@@ -53,24 +47,24 @@ EXTRACTORS = {
|
|
| 53 |
'run_id': lambda x: x.id,
|
| 54 |
'user': lambda x: x.user.name[:16],
|
| 55 |
'username': lambda x: x.user.username[:16],
|
| 56 |
-
|
| 57 |
-
'last_event_at': lambda x: pd.
|
| 58 |
|
| 59 |
'netuid': lambda x: x.config.get('netuid'),
|
| 60 |
'mock': lambda x: x.config.get('neuron').get('mock'),
|
| 61 |
'sample_size': lambda x: x.config.get('neuron').get('sample_size'),
|
| 62 |
'queue_size': lambda x: x.config.get('neuron').get('queue_size'),
|
| 63 |
'timeout': lambda x: x.config.get('neuron').get('timeout'),
|
| 64 |
-
|
| 65 |
'epoch_length': lambda x: x.config.get('neuron').get('epoch_length'),
|
| 66 |
'disable_set_weights': lambda x: x.config.get('neuron').get('disable_set_weights'),
|
| 67 |
|
| 68 |
# This stuff is from the last logged event
|
| 69 |
'num_steps': lambda x: x.summary.get('_step'),
|
| 70 |
-
|
| 71 |
-
|
| 72 |
-
|
| 73 |
-
|
| 74 |
'pdb_updates': lambda x: x.summary.get('updated_count'),
|
| 75 |
'total_returned_sizes': lambda x: get_total_file_sizes(x),
|
| 76 |
'total_sent_sizes': lambda x: get_total_md_input_sizes(x),
|
|
@@ -80,12 +74,10 @@ EXTRACTORS = {
|
|
| 80 |
'version': lambda x: x.tags[0],
|
| 81 |
'spec_version': lambda x: x.tags[1],
|
| 82 |
'vali_hotkey': lambda x: x.tags[2],
|
| 83 |
-
|
| 84 |
# System metrics
|
| 85 |
'disk_read': lambda x: x.system_metrics.get('system.disk.in'),
|
| 86 |
'disk_write': lambda x: x.system_metrics.get('system.disk.out'),
|
| 87 |
-
'network_sent': lambda x: x.system_metrics.get('system.network.sent'),
|
| 88 |
-
'network_recv': lambda x: x.system_metrics.get('system.network.recv'),
|
| 89 |
# Really slow stuff below
|
| 90 |
# 'started_at': lambda x: x.metadata.get('startedAt'),
|
| 91 |
# 'disk_used': lambda x: x.metadata.get('disk').get('/').get('used'),
|
|
@@ -142,189 +134,44 @@ def get_total_md_input_sizes(run):
|
|
| 142 |
return convert_unit(size_bytes, from_unit='B', to_unit=BASE_UNITS)
|
| 143 |
|
| 144 |
|
|
|
|
| 145 |
|
| 146 |
-
|
| 147 |
-
|
| 148 |
-
|
| 149 |
-
try:
|
| 150 |
-
return json.loads(x)
|
| 151 |
-
except ValueError:
|
| 152 |
-
return []
|
| 153 |
-
def np_sum(x):
|
| 154 |
-
try:
|
| 155 |
-
# Flatten the list of lists and convert it to a NumPy array
|
| 156 |
-
flat_array = np.array([item for sublist in x for item in sublist])
|
| 157 |
-
|
| 158 |
-
# Use np.sum() to sum all elements in the flattened array
|
| 159 |
-
total_sum = np.sum(flat_array)
|
| 160 |
-
return total_sum
|
| 161 |
-
except TypeError:
|
| 162 |
-
return 0
|
| 163 |
-
df = df.dropna(subset=['md_inputs_sizes', 'response_returned_files_sizes'])
|
| 164 |
-
df['md_inputs_sizes'] = df.md_inputs_sizes.apply(safe_json_loads)
|
| 165 |
-
df['response_returned_files_sizes'] = df.response_returned_files_sizes.apply(safe_json_loads)
|
| 166 |
-
df['md_inputs_sum'] = df.md_inputs_sizes.apply(np.sum)
|
| 167 |
-
df['md_outputs_sum'] = df.response_returned_files_sizes.apply(np_sum)
|
| 168 |
-
df['md_inputs_sum'] = df['md_inputs_sum'].apply(convert_unit, from_unit='B', to_unit=BASE_UNITS)
|
| 169 |
-
df['md_outputs_sum'] = df['md_outputs_sum'].apply(convert_unit, from_unit='B', to_unit=BASE_UNITS)
|
| 170 |
-
|
| 171 |
-
df_24h = df_24h.dropna(subset=['md_inputs_sizes', 'response_returned_files_sizes'])
|
| 172 |
-
df_24h['md_inputs_sizes'] = df_24h.md_inputs_sizes.apply(safe_json_loads)
|
| 173 |
-
df_24h['response_returned_files_sizes'] = df_24h.response_returned_files_sizes.apply(safe_json_loads)
|
| 174 |
-
df_24h['md_inputs_sum'] = df_24h.md_inputs_sizes.apply(np.sum)
|
| 175 |
-
df_24h['md_outputs_sum'] = df_24h.response_returned_files_sizes.apply(np_sum)
|
| 176 |
-
|
| 177 |
-
|
| 178 |
-
validator_sent = np.nansum(df['md_inputs_sum'].values)
|
| 179 |
-
miner_sent = np.nansum(df['md_outputs_sum'].values)
|
| 180 |
-
validator_sent_24h = np.nansum(df_24h['md_inputs_sum'].values)
|
| 181 |
-
miner_sent_24h = np.nansum(df_24h['md_outputs_sum'].values)
|
| 182 |
-
|
| 183 |
-
return {'all_time': {
|
| 184 |
-
'validator_sent': validator_sent,
|
| 185 |
-
'miner_sent': miner_sent,
|
| 186 |
-
},
|
| 187 |
-
'last_24h': {
|
| 188 |
-
'validator_sent': convert_unit(validator_sent_24h, from_unit='B', to_unit=BASE_UNITS),
|
| 189 |
-
'miner_sent': convert_unit(miner_sent_24h, from_unit='B', to_unit=BASE_UNITS),
|
| 190 |
-
},
|
| 191 |
-
'data': df[['md_inputs_sum', 'md_outputs_sum', 'updated_at']].to_dict()
|
| 192 |
-
}
|
| 193 |
-
|
| 194 |
-
def calculate_productivity_data(df):
|
| 195 |
-
completed_jobs = df[df['updated_count'] == 10]
|
| 196 |
-
completed_jobs['last_event_at'] = pd.to_datetime(completed_jobs['updated_at'])
|
| 197 |
-
unique_folded = completed_jobs.drop_duplicates(subset=['pdb_id'], keep='first')
|
| 198 |
-
completed_jobs = completed_jobs.sort_values(by='last_event_at').reset_index()
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| 199 |
-
completed_jobs['cumulative_jobs'] = completed_jobs.index + 1
|
| 200 |
-
unique_folded = unique_folded.sort_values(by='last_event_at').reset_index()
|
| 201 |
-
unique_folded['cumulative_jobs'] = unique_folded.index + 1
|
| 202 |
return {
|
| 203 |
-
'
|
| 204 |
-
'
|
| 205 |
-
'
|
| 206 |
-
'
|
| 207 |
-
|
| 208 |
-
|
| 209 |
-
def get_productivity(df_all, df_24h, df_30d):
|
| 210 |
-
result = {
|
| 211 |
-
'all_time': {
|
| 212 |
-
'unique_folded': 0,
|
| 213 |
-
'total_completed_jobs': 0,
|
| 214 |
-
'unique_folded_data': {},
|
| 215 |
-
'total_completed_jobs_data': {}
|
| 216 |
-
},
|
| 217 |
-
'last_24h': {
|
| 218 |
-
'unique_folded': 0,
|
| 219 |
-
'total_completed_jobs': 0,
|
| 220 |
-
"unique_folded_data": {},
|
| 221 |
-
'total_completed_jobs_data': {}
|
| 222 |
-
},
|
| 223 |
-
'last_30d': {
|
| 224 |
-
'unique_folded': 0,
|
| 225 |
-
'total_completed_jobs': 0,
|
| 226 |
-
"unique_folded_data": {},
|
| 227 |
-
'total_completed_jobs_data': {}
|
| 228 |
}
|
| 229 |
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}
|
| 230 |
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| 233 |
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| 234 |
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|
| 235 |
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|
| 236 |
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| 237 |
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|
| 238 |
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|
| 239 |
-
if df_30d is not None:
|
| 240 |
-
result['last_30d'].update(calculate_productivity_data(df_30d))
|
| 241 |
-
return result
|
| 242 |
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| 243 |
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|
| 244 |
|
| 245 |
df = df.loc[df.validator_permit==False]
|
| 246 |
df.index = range(df.shape[0])
|
| 247 |
-
return df.groupby(entity_choice).I.sum().sort_values().reset_index()
|
| 248 |
-
|
| 249 |
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|
| 250 |
-
|
| 251 |
-
def fetch_new_runs(base_path: str = BASE_PATH , netuid: int = 25, min_steps: int = 10, save_path: str= SAVE_PATH, extractors: dict = EXTRACTORS):
|
| 252 |
-
runs_checker = pd.read_csv('runs_checker.csv')
|
| 253 |
-
current_time = pd.to_datetime(time.time(), unit='s')
|
| 254 |
-
current_time_str = current_time.strftime('%y-%m-%d') # Format as 'YYYYMMDD'
|
| 255 |
-
new_ticker = runs_checker.check_ticker.max() + 1
|
| 256 |
-
|
| 257 |
-
new_rows_list = []
|
| 258 |
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|
| 259 |
-
# update runs list based on all current runs running
|
| 260 |
-
for run in api.runs(base_path):
|
| 261 |
-
num_steps = run.summary.get('_step')
|
| 262 |
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|
| 263 |
-
if run.config.get('netuid') != netuid:
|
| 264 |
-
continue
|
| 265 |
-
|
| 266 |
-
if num_steps is None or num_steps < min_steps:
|
| 267 |
-
continue
|
| 268 |
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|
| 269 |
-
if run.state =='running':
|
| 270 |
-
new_rows_list.append({
|
| 271 |
-
'run_id': run.id,
|
| 272 |
-
'state': run.state,
|
| 273 |
-
'step': num_steps,
|
| 274 |
-
'check_time': current_time,
|
| 275 |
-
'check_ticker': new_ticker,
|
| 276 |
-
'user': run.user.name[:16],
|
| 277 |
-
'username': run.user.username[:16]
|
| 278 |
-
})
|
| 279 |
-
if new_rows_list:
|
| 280 |
-
new_rows_df = pd.DataFrame(new_rows_list)
|
| 281 |
-
runs_checker= pd.concat([runs_checker, new_rows_df], ignore_index=True)
|
| 282 |
-
# save
|
| 283 |
-
runs_checker.to_csv('runs_checker.csv', index=False)
|
| 284 |
-
|
| 285 |
-
bt.logging.info(f'Cross checking runs for ticker {new_ticker} against previous ticker')
|
| 286 |
-
previous_check = runs_checker[runs_checker.check_ticker==new_ticker - 1]
|
| 287 |
-
current_check = runs_checker[runs_checker.check_ticker == new_ticker]
|
| 288 |
-
|
| 289 |
-
# save ended runs from last check
|
| 290 |
-
for run_id in previous_check.run_id:
|
| 291 |
-
if run_id not in current_check.run_id:
|
| 292 |
-
|
| 293 |
-
frame = load_run(f'{base_path}/{run_id}', extractors=EXTRACTORS)
|
| 294 |
-
|
| 295 |
-
csv_path = os.path.join(save_path, f"{run_id}.csv")
|
| 296 |
-
frame.to_csv(csv_path)
|
| 297 |
-
|
| 298 |
-
# save new runs
|
| 299 |
-
for run in api.runs(base_path):
|
| 300 |
-
if run.config.get('netuid') != netuid:
|
| 301 |
-
continue
|
| 302 |
-
num_steps = run.summary.get('_step')
|
| 303 |
-
if num_steps is None or num_steps < min_steps:
|
| 304 |
-
continue
|
| 305 |
-
if run.state =='running':
|
| 306 |
-
frame = load_run(run_path='/'.join(run.path), extractors=EXTRACTORS)
|
| 307 |
-
csv_path = os.path.join(save_path, f"{run.id}.csv")
|
| 308 |
-
frame.to_csv(csv_path)
|
| 309 |
-
|
| 310 |
-
|
| 311 |
-
def preload_data():
|
| 312 |
-
# save all the paths of files to a list in a directory
|
| 313 |
-
paths_list = []
|
| 314 |
-
for path in os.listdir(SAVE_PATH):
|
| 315 |
-
paths_list.append(os.path.join(SAVE_PATH, path))
|
| 316 |
-
|
| 317 |
-
df_list = []
|
| 318 |
-
|
| 319 |
-
for path in paths_list:
|
| 320 |
-
df = pd.read_csv(path,low_memory=False)
|
| 321 |
-
df_list.append(df)
|
| 322 |
-
|
| 323 |
-
combined_df = pd.concat(df_list, ignore_index=True)
|
| 324 |
-
return combined_df
|
| 325 |
|
| 326 |
@st.cache_data()
|
| 327 |
-
def get_metagraph():
|
|
|
|
| 328 |
subtensor = bt.subtensor(network=NETWORK)
|
| 329 |
m = subtensor.metagraph(netuid=NETUID)
|
| 330 |
meta_cols = ['I','stake','trust','validator_trust','validator_permit','C','R','E','dividends','last_update']
|
|
@@ -341,26 +188,20 @@ def get_metagraph():
|
|
| 341 |
return df_m
|
| 342 |
|
| 343 |
|
| 344 |
-
|
|
|
|
|
|
|
| 345 |
print('Loading run:', run_path)
|
| 346 |
run = api.run(run_path)
|
| 347 |
-
df = pd.DataFrame(list(run.scan_history()))
|
| 348 |
-
|
| 349 |
for col in ['updated_at', 'best_loss_at', 'created_at']:
|
| 350 |
if col in df.columns:
|
| 351 |
df[col] = pd.to_datetime(df[col])
|
| 352 |
-
|
| 353 |
-
|
| 354 |
-
extractor_df = {key: func(run) for key, func in extractors.items()}
|
| 355 |
-
repeated_data = {key: [value] * num_rows for key, value in extractor_df.items()}
|
| 356 |
-
extractor_df = pd.DataFrame(repeated_data)
|
| 357 |
-
|
| 358 |
-
combined_df = pd.concat([df, extractor_df], axis=1)
|
| 359 |
-
|
| 360 |
-
return combined_df
|
| 361 |
|
| 362 |
@st.cache_data(show_spinner=False)
|
| 363 |
-
def build_data(timestamp=None, paths=
|
| 364 |
|
| 365 |
save_path = '_saved_runs.csv'
|
| 366 |
filters = {}
|
|
@@ -431,4 +272,10 @@ def load_state_vars():
|
|
| 431 |
}
|
| 432 |
|
| 433 |
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|
| 434 |
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|
| 1 |
import os
|
|
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|
|
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|
|
|
|
|
|
|
|
|
| 2 |
import tqdm
|
| 3 |
+
import time
|
| 4 |
import wandb
|
| 5 |
+
import streamlit as st
|
| 6 |
+
import pandas as pd
|
| 7 |
+
import bittensor as bt
|
| 8 |
+
|
| 9 |
+
|
| 10 |
# TODO: Store the runs dataframe (as in sn1 dashboard) and top up with the ones created since the last snapshot
|
| 11 |
# TODO: Store relevant wandb data in a database for faster access
|
| 12 |
|
|
|
|
| 15 |
MIN_STEPS = 12 # minimum number of steps in wandb run in order to be worth analyzing
|
| 16 |
MAX_RUNS = 100#0000
|
| 17 |
NETUID = 25
|
| 18 |
+
BASE_PATHS = ['macrocosmos/folding-validators--moved', 'macrocosmos/folding-validators'] # added historical data from otf wandb and current data
|
| 19 |
NETWORK = 'finney'
|
| 20 |
KEYS = None
|
| 21 |
ABBREV_CHARS = 8
|
|
|
|
| 23 |
|
| 24 |
PDBS_PER_RUN_STEP = 0.083
|
| 25 |
AVG_MD_STEPS = 30_000
|
| 26 |
+
BASE_UNITS = 'MB'
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 27 |
|
| 28 |
api = wandb.Api(timeout=120, api_key='cdcbe340bb7937d3a289d39632491d12b39231b7')
|
| 29 |
|
|
|
|
| 47 |
'run_id': lambda x: x.id,
|
| 48 |
'user': lambda x: x.user.name[:16],
|
| 49 |
'username': lambda x: x.user.username[:16],
|
| 50 |
+
'created_at': lambda x: pd.Timestamp(x.created_at),
|
| 51 |
+
'last_event_at': lambda x: pd.Timestamp(x.summary.get('_timestamp'), unit='s'),
|
| 52 |
|
| 53 |
'netuid': lambda x: x.config.get('netuid'),
|
| 54 |
'mock': lambda x: x.config.get('neuron').get('mock'),
|
| 55 |
'sample_size': lambda x: x.config.get('neuron').get('sample_size'),
|
| 56 |
'queue_size': lambda x: x.config.get('neuron').get('queue_size'),
|
| 57 |
'timeout': lambda x: x.config.get('neuron').get('timeout'),
|
| 58 |
+
'update_interval': lambda x: x.config.get('neuron').get('update_interval'),
|
| 59 |
'epoch_length': lambda x: x.config.get('neuron').get('epoch_length'),
|
| 60 |
'disable_set_weights': lambda x: x.config.get('neuron').get('disable_set_weights'),
|
| 61 |
|
| 62 |
# This stuff is from the last logged event
|
| 63 |
'num_steps': lambda x: x.summary.get('_step'),
|
| 64 |
+
'runtime': lambda x: x.summary.get('_runtime'),
|
| 65 |
+
'init_energy': lambda x: x.summary.get('init_energy'),
|
| 66 |
+
'best_energy': lambda x: x.summary.get('best_loss'),
|
| 67 |
+
'pdb_id': lambda x: x.summary.get('pdb_id'),
|
| 68 |
'pdb_updates': lambda x: x.summary.get('updated_count'),
|
| 69 |
'total_returned_sizes': lambda x: get_total_file_sizes(x),
|
| 70 |
'total_sent_sizes': lambda x: get_total_md_input_sizes(x),
|
|
|
|
| 74 |
'version': lambda x: x.tags[0],
|
| 75 |
'spec_version': lambda x: x.tags[1],
|
| 76 |
'vali_hotkey': lambda x: x.tags[2],
|
| 77 |
+
|
| 78 |
# System metrics
|
| 79 |
'disk_read': lambda x: x.system_metrics.get('system.disk.in'),
|
| 80 |
'disk_write': lambda x: x.system_metrics.get('system.disk.out'),
|
|
|
|
|
|
|
| 81 |
# Really slow stuff below
|
| 82 |
# 'started_at': lambda x: x.metadata.get('startedAt'),
|
| 83 |
# 'disk_used': lambda x: x.metadata.get('disk').get('/').get('used'),
|
|
|
|
| 134 |
return convert_unit(size_bytes, from_unit='B', to_unit=BASE_UNITS)
|
| 135 |
|
| 136 |
|
| 137 |
+
def get_data_transferred(df, unit='GB'):
|
| 138 |
|
| 139 |
+
factor = convert_unit(1, from_unit=BASE_UNITS, to_unit=unit)
|
| 140 |
+
sent = df.total_data_sent.sum()
|
| 141 |
+
received = df.total_data_received.sum()
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
| 142 |
return {
|
| 143 |
+
'sent':sent * factor,
|
| 144 |
+
'received':received * factor,
|
| 145 |
+
'total': (sent + received) * factor,
|
| 146 |
+
'read':df.disk_read.sum() * factor,
|
| 147 |
+
'write':df.disk_write.sum() * factor,
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
| 148 |
}
|
|
|
|
| 149 |
|
| 150 |
|
| 151 |
+
def get_productivity(df):
|
| 152 |
|
| 153 |
+
# Estimate the number of unique pdbs folded using our heuristic
|
| 154 |
+
unique_folded = df.unique_pdbs.sum().round()
|
| 155 |
+
# Estimate the total number of simulations completed using our heuristic
|
| 156 |
+
total_simulations = df.total_pdbs.sum().round()
|
| 157 |
+
# Estimate the total number of simulation steps completed using our heuristic
|
| 158 |
+
total_md_steps = df.total_md_steps.sum().round()
|
|
|
|
|
|
|
|
|
|
| 159 |
|
| 160 |
+
return {
|
| 161 |
+
'unique_folded': unique_folded,
|
| 162 |
+
'total_simulations': total_simulations,
|
| 163 |
+
'total_md_steps': total_md_steps,
|
| 164 |
+
}
|
| 165 |
+
|
| 166 |
+
def get_leaderboard(df, ntop=10, entity_choice='identity'):
|
| 167 |
|
| 168 |
df = df.loc[df.validator_permit==False]
|
| 169 |
df.index = range(df.shape[0])
|
| 170 |
+
return df.groupby(entity_choice).I.sum().sort_values().reset_index().tail(ntop)
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
| 171 |
|
| 172 |
@st.cache_data()
|
| 173 |
+
def get_metagraph(time):
|
| 174 |
+
print(f'Loading metagraph with time {time}')
|
| 175 |
subtensor = bt.subtensor(network=NETWORK)
|
| 176 |
m = subtensor.metagraph(netuid=NETUID)
|
| 177 |
meta_cols = ['I','stake','trust','validator_trust','validator_permit','C','R','E','dividends','last_update']
|
|
|
|
| 188 |
return df_m
|
| 189 |
|
| 190 |
|
| 191 |
+
@st.cache_data()
|
| 192 |
+
def load_run(run_path, keys=KEYS):
|
| 193 |
+
|
| 194 |
print('Loading run:', run_path)
|
| 195 |
run = api.run(run_path)
|
| 196 |
+
df = pd.DataFrame(list(run.scan_history(keys=keys)))
|
|
|
|
| 197 |
for col in ['updated_at', 'best_loss_at', 'created_at']:
|
| 198 |
if col in df.columns:
|
| 199 |
df[col] = pd.to_datetime(df[col])
|
| 200 |
+
print(f'+ Loaded {len(df)} records')
|
| 201 |
+
return df
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 202 |
|
| 203 |
@st.cache_data(show_spinner=False)
|
| 204 |
+
def build_data(timestamp=None, paths=BASE_PATHS, min_steps=MIN_STEPS, use_cache=True):
|
| 205 |
|
| 206 |
save_path = '_saved_runs.csv'
|
| 207 |
filters = {}
|
|
|
|
| 272 |
}
|
| 273 |
|
| 274 |
|
| 275 |
+
if __name__ == '__main__':
|
| 276 |
+
|
| 277 |
+
print('Loading runs')
|
| 278 |
+
df = load_runs()
|
| 279 |
|
| 280 |
+
df.to_csv('test_wandb_data.csv', index=False)
|
| 281 |
+
print(df)
|