Commit History

fix: nnUNet models disappearing from dropdown on HF Spaces
e2c3db1
Running

maregu2023 commited on

fix: _nnunet_path_or_none now checks .pth weight file, not just plans.json
c049516

maregu2023 commited on

feat: auto-download nnUNet checkpoints from HF Hub when local files missing
0369b1a

maregu2023 commited on

fix: sanitize OMP_NUM_THREADS at 3 levels to prevent libgomp crash on HF Spaces
8d0d76d

maregu2023 commited on

fix: override OMP_NUM_THREADS to fix libgomp crash on HF Spaces
f25a18c

maregu2023 commited on

deploy: add suggested_hardware t4-small, fix Dockerfile CUDA assertion
17c82aa

maregu2023 commited on

fix: remove CUDA assertion from Docker build verification
a017646

maregu2023 commited on

fix: split nnunetv2 install to preserve CUDA PyTorch in Docker
c7efece

maregu2023 commited on

fix: enable nnunetv2 in requirements.txt, use CUDA base image in Dockerfile
4aa9277

maregu2023 commited on

fix: repeat single channel instead of zero-padding for multi-channel nnUNet
e727a30

maregu2023 commited on

fix: zero-pad missing channels for multi-channel nnUNet models
9d251a7

maregu2023 commited on

fix: resolve NameError in nnUNetWrapper.load() — use self.config.preprocessing
b8f801b

maregu2023 commited on

feat: wire real checkpoints (nnUNet ISLES + DWI, SAM-Med3D), remove placeholder models
fa27688

maregu2023 commited on

Fixing three bugs from nnUNetv2 wrapper, such as pacing extraction: (x,y,z) → (z,y,x) to match project convention
5fcd2a4

maregu2023 commited on

feat: add HF Spaces Docker deployment
da9126b

maregu2023 commited on

Add a markdown note for HF deployment
ba67644

maregu2023 commited on

feat: Add nnUNet integration, Dice metrics, and split INFO panel with overlap viewer
d2c2086

maregu2023 commited on

Update README.md with the steps on how to run both the Gradio and API based web apps
cf575e8

maregu2023 commited on

Phase 12: Canvas2D slicer frontend with FastAPI backend
98c4545

maregu2023 commited on

Add Phase 12: VTK.js slicer frontend for medical imaging
6876abc

maregu2023 commited on

Add Phase 11: FastAPI backend for slicer-grade frontend support
f05ab78

maregu2023 commited on

Swap the order of models in the dropdown for models
458f770

maregu2023 commited on

Trigger HF Spaces rebuild
3104c60

maregu2023 commited on

Fix: Add weights_only=False for PyTorch 2.6+ compatibility with SAM-Med3D checkpoints
568e0f2

maregu2023 commited on

Fix: Monkey-patch Gradio schema bug for HF Spaces compatibility
0dee6ca

maregu2023 commited on

Remove ssr parameter in launch() function
cfbb33f

maregu2023 commited on

Fix root cause: Remove gr.update() to prevent Gradio schema serialization bug
1b1a58d

maregu2023 commited on

Fix: Upgrade to Gradio 5.12.0 and disable SSR to fix schema bug
3803722

maregu2023 commited on

Fix: Remove all type annotations from Gradio handlers to prevent schema bug
45e6dd0

maregu2023 commited on

Fix: Correct type annotation causing Gradio schema serialization bug
3846302

maregu2023 commited on

Fix: Use gr.update() instead of gr.Slider() to avoid JSON schema bug
ae8a3d6

maregu2023 commited on

Upgrade to Gradio 5.x to fix JSON schema serialization bug
14c06ea

maregu2023 commited on

Fix: simplify load_volume to avoid gr.State and chained handlers
da7786d

maregu2023 commited on

Fix: replace gr.JSON with gr.Textbox to fix schema serialization bug
dd12647

maregu2023 commited on

Fix: call launch() on HF Spaces with correct server settings
16cace9

maregu2023 commited on

Fix: use Gradio 4.31.0, remove manual launch on HF Spaces
3314249

maregu2023 commited on

Fix version compatibility for HF spaces
0f21683

maregu2023 commited on

Deploy brain lesion segmentation web app
1bb9695

maregu2023 commited on

UI: Compact slicer-style layout, improved placeholder inference
d0bd346

maregu2023 commited on

Initial commit: Medical image segmentation app
eecd79d

maregu2023 commited on