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LesionDetection

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LesionDetection

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History: 40 commits

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fix: nnUNet models disappearing from dropdown on HF Spaces

e2c3db1 3 months ago

.github
Initial commit: Medical image segmentation app 5 months ago
checkpoints
feat: wire real checkpoints (nnUNet ISLES + DWI, SAM-Med3D), remove placeholder models 3 months ago
docs
Add a markdown note for HF deployment 3 months ago
seg_app
fix: nnUNet models disappearing from dropdown on HF Spaces 3 months ago
.dockerignore

154 Bytes
feat: add HF Spaces Docker deployment 3 months ago
.gitignore

1.11 kB
feat: wire real checkpoints (nnUNet ISLES + DWI, SAM-Med3D), remove placeholder models 3 months ago
Dockerfile

2.36 kB
fix: sanitize OMP_NUM_THREADS at 3 levels to prevent libgomp crash on HF Spaces 3 months ago
README.md

16.2 kB
deploy: add suggested_hardware t4-small, fix Dockerfile CUDA assertion 3 months ago
app.py

6.31 kB
Fixing three bugs from nnUNetv2 wrapper, such as pacing extraction: (x,y,z) → (z,y,x) to match project convention 3 months ago
entrypoint.sh

954 Bytes
fix: sanitize OMP_NUM_THREADS at 3 levels to prevent libgomp crash on HF Spaces 3 months ago
environ.yml

14.8 kB
Fixing three bugs from nnUNetv2 wrapper, such as pacing extraction: (x,y,z) → (z,y,x) to match project convention 3 months ago
environ_webapp.yml

7.04 kB
Fixing three bugs from nnUNetv2 wrapper, such as pacing extraction: (x,y,z) → (z,y,x) to match project convention 3 months ago
requirements.txt

2.35 kB
fix: enable nnunetv2 in requirements.txt, use CUDA base image in Dockerfile 3 months ago
test_import.py

977 Bytes
Deploy brain lesion segmentation web app 5 months ago
test_sam3d_inference.ipynb

365 kB
Deploy brain lesion segmentation web app 5 months ago