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| title: MCP Research | |
| emoji: 🚀 | |
| colorFrom: red | |
| colorTo: red | |
| sdk: docker | |
| app_port: 8501 | |
| tags: | |
| - streamlit | |
| pinned: false | |
| short_description: Streamlit template space | |
| # AI-Powered Scientific Research Companion | |
| Welcome to your AI-driven research assistant—hosted as a Hugging Face Space! | |
| --- | |
| ## 🚀 Live Demo | |
| 👉 https://huggingface.co/spaces/your-username/MCP_Research | |
| --- | |
| ## Features | |
| - 🔍 **One-Click Discovery** | |
| Search academic articles, preprints, and the open web via MCP servers (`pskill9/web-search`, `metatool-ai/metatool-app`). | |
| - 📓 **Reproducible Notebook** | |
| Fetch and run code snippets for core experiments using a Python-run MCP sandbox. | |
| - 🔗 **Interactive Knowledge Graph** | |
| Build and explore concept‐and‐method graphs via a vector-store MCP (Chroma). | |
| - 🛠️ **Provenance Tracking** | |
| Store metadata and execution history in a SQL database via MCP. | |
| - 🎨 **Light & Dark Themes** | |
| Toggle UI themes for day/night readability. | |
| --- | |
| ## 🔧 Setup | |
| 1. **Fork or Clone** | |
| ```bash | |
| git clone https://huggingface.co/spaces/your-username/MCP_Research.git | |
| cd MCP_Research | |
| Configure Endpoints | |
| Copy and edit config.example.yaml → config.yaml: | |
| yaml | |
| Copy code | |
| mcp_servers: | |
| web_search: http://localhost:3000 | |
| pubmed: http://localhost:3001 | |
| chroma: http://localhost:3002 | |
| python_run: http://localhost:3003 | |
| db_url: sqlite:///embeddings.db | |
| Install Dependencies | |
| bash | |
| Copy code | |
| pip install -r requirements.txt | |
| Run Locally (optional) | |
| bash | |
| Copy code | |
| streamlit run app.py --server.port 8501 --server.address 0.0.0.0 | |
| 📦 Deployment on Hugging Face | |
| Create a New Space | |
| Choose Streamlit as the runtime. | |
| Push your repo to the Space. | |
| Environment Variables / Secrets | |
| In your Space’s Settings → Secrets, add any API keys or credentials required by your MCP endpoints. | |
| Automatic Build & Launch | |
| HF will install from requirements.txt and launch app.py automatically. | |
| 📁 Project Layout | |
| arduino | |
| Copy code | |
| ├── .gitignore | |
| ├── README.md | |
| ├── config.yaml | |
| ├── requirements.txt | |
| ├── Dockerfile | |
| ├── app.py | |
| ├── orchestrator/ | |
| │ ├── client.py | |
| │ ├── dispatcher.py | |
| │ └── provenance.py | |
| ├── components/ | |
| │ ├── sidebar.py | |
| │ ├── paper_list.py | |
| │ ├── notebook_view.py | |
| │ └── graph_view.py | |
| ├── scripts/ | |
| │ ├── ingest.py | |
| │ └── reindex.py | |
| └── demo.ipynb | |
| 🤝 Contribute | |
| ⭐ Star this Space | |
| 🐛 Report issues or suggest features | |
| 🔀 Submit PRs — we welcome enhancements and new MCP integrations! | |
| 📜 License | |
| MIT © 2025 |