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microbe-model
File size: 883 Bytes
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{
  "split_mode": "family",
  "n_splits": 5,
  "seed": 7,
  "elapsed_s": 4.729962110519409,
  "manifest_parquet": "artifacts/external_benchmark_manifest.parquet",
  "manifest_csv": "artifacts/external_benchmark_manifest.csv",
  "rows": 25728,
  "media_labels": 40,
  "tools": {
    "GenomeSPOT": {
      "command": "uv run python -m genome_spot.genome_spot",
      "path": "data/external_tools/GenomeSPOT-main"
    },
    "CarveMe": {
      "command": "uv run --with carveme carve",
      "path": "/opt/homebrew/bin/diamond"
    },
    "gapseq": {
      "command": null,
      "path": null
    }
  },
  "fasta_coverage": {
    "fasta_dir": "data/external_benchmark_fastas",
    "unique_accessions": 16154,
    "present_fastas": 8,
    "missing_fastas": 16146,
    "coverage_pct": 0.04952333787297264
  },
  "download": {
    "attempted": 0,
    "downloaded": 0,
    "failed": 0
  }
}