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microbe-model

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History: 45 commits

Miyu Horiuchi

Deploy app from main@a3254bf (no paper/ binaries)

0ed74db 2 days ago

api
Deploy app from main@a3254bf (no paper/ binaries) 2 days ago
artifacts
Deploy app from main@a3254bf (no paper/ binaries) 2 days ago
cerebrium
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data
UI redesign: Prototype A "Lab notebook" from Claude Design bundle 29 days ago
docs
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kaggle
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models
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scripts
Deploy app from main@a3254bf (no paper/ binaries) 2 days ago
src
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tests
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web
Resolve organism names to NCBI accessions in /api/predict 3 days ago
.dockerignore

879 Bytes
HF Spaces: Dockerfile for v2 (FastAPI + React) deployment 28 days ago
.env.example

238 Bytes
Rewrite BacDive client for v2 public API (no auth required) about 1 month ago
.gitattributes

88 Bytes
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline about 1 month ago
.gitignore

2.76 kB
Deploy app from main@a3254bf (no paper/ binaries) 2 days ago
.python-version

5 Bytes
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline about 1 month ago
Dockerfile

2.88 kB
Deploy hybrid catalog predictions 11 days ago
OVERNIGHT_SUMMARY.md

3.12 kB
Final demo deliverable: v1 baseline + 5K uncultured predictions + recommender online about 1 month ago
README.md

33 kB
Deploy app from main@a3254bf (no paper/ binaries) 2 days ago
app.py

55.4 kB
UI redesign: Prototype A "Lab notebook" from Claude Design bundle 29 days ago
pyproject.toml

1.11 kB
Deploy app from main@a3254bf (no paper/ binaries) 2 days ago
requirements.txt

208 Bytes
v2 architecture: FastAPI backend + React frontend (pixel-perfect Prototype A) 28 days ago
uv.lock

658 kB
Deploy app from main@a3254bf (no paper/ binaries) 2 days ago