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Miyu Horiuchi
v2 results: ESM-2 t6 (8M, 20-protein sample) loses to v1 hand-crafted features on all 4 phenotype targets
8800528 | Training table: 17,030 strains × 320 embedding dims | |
| Distinct groups: 605 | |
| Trained in 270.5s. Wrote /Users/miyuhoriuchi/microbe-model/artifacts/embedding_results.json | |
| Comparison vs v1 hand-crafted features: | |
| optimal_temperature_c mae = 3.8112 (n_folds=5) | |
| optimal_ph mae = 0.5437 (n_folds=5) | |
| oxygen_requirement f1_macro = 0.2664 (n_folds=5) | |
| salt_tolerance_pct mae = 2.5972 (n_folds=5) | |