microbe-model / artifacts /train_v2.log
Miyu Horiuchi
v2 results: ESM-2 t6 (8M, 20-protein sample) loses to v1 hand-crafted features on all 4 phenotype targets
8800528
Training table: 17,030 strains × 320 embedding dims
Distinct groups: 605
Trained in 270.5s. Wrote /Users/miyuhoriuchi/microbe-model/artifacts/embedding_results.json
Comparison vs v1 hand-crafted features:
optimal_temperature_c mae = 3.8112 (n_folds=5)
optimal_ph mae = 0.5437 (n_folds=5)
oxygen_requirement f1_macro = 0.2664 (n_folds=5)
salt_tolerance_pct mae = 2.5972 (n_folds=5)