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microbe-model

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Commit History

Deploy app from main@a3254bf (no paper/ binaries)

0ed74db

Running

Miyu Horiuchi commited on 3 days ago

Deploy hybrid catalog predictions

3b4d471

Miyu Horiuchi commited on 12 days ago

Add MediaDive-derived features (medium pH, NaCl, n_media) — all 4 targets improve

5df9ef8

Miyu Horiuchi Claude Opus 4.7 (1M context) commited on 27 days ago

Fix _derive_salt to pick optimum entries — salt MAE 2.52 → 2.17 (-13.7%)

56b0c4e

Miyu Horiuchi Claude Opus 4.7 (1M context) commited on 27 days ago

Expand training corpus to 46K strains: species-name → NCBI genome + isolation features

f0f1d93

Miyu Horiuchi Claude Opus 4.7 (1M context) commited on 27 days ago

UI prep: pre-train phenotype heads + pre-score uncultured media

d23315e

Miyu Horiuchi Claude Opus 4.7 (1M context) commited on Apr 29

v2 results: ESM-2 t6 (8M, 20-protein sample) loses to v1 hand-crafted features on all 4 phenotype targets

8800528

Miyu Horiuchi Claude Opus 4.7 (1M context) commited on Apr 29

Final demo deliverable: v1 baseline + 5K uncultured predictions + recommender online

79a721f

Miyu Horiuchi Claude Opus 4.7 (1M context) commited on Apr 27

Final overnight commit: trained baseline + eval report + summary

2ae21d7

Miyu Horiuchi Claude Opus 4.7 (1M context) commited on Apr 27