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microbe-model / tests

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History: 9 commits

Miyu Horiuchi

Deploy app from main@a3254bf (no paper/ binaries)

0ed74db 3 days ago

__init__.py

0 Bytes
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline about 1 month ago
test_bacdive.py

3.22 kB
Rewrite BacDive client for v2 public API (no auth required) about 1 month ago
test_composition.py

1.57 kB
Add v1 composition features (tetranucleotides + codon usage) about 1 month ago
test_explore.py

2.23 kB
Add tests for explore module (correlations + class means) about 1 month ago
test_external_benchmark_prep.py

1.34 kB
Deploy app from main@a3254bf (no paper/ binaries) 3 days ago
test_features.py

1.53 kB
Scaffold v0: BacDive + NCBI ingestion, genome feature extractor, XGBoost baseline about 1 month ago
test_genomespot_benchmark.py

2.03 kB
Deploy app from main@a3254bf (no paper/ binaries) 3 days ago
test_hybrid_predictor.py

4.18 kB
Deploy app from main@a3254bf (no paper/ binaries) 3 days ago
test_integration.py

5.57 kB
Fix predictions parquet type mix + plumb feature_cols through eval about 1 month ago
test_lambda_train_lora.py

852 Bytes
Deploy app from main@a3254bf (no paper/ binaries) 3 days ago
test_lora_checkpoint_eval.py

3.76 kB
Deploy app from main@a3254bf (no paper/ binaries) 3 days ago
test_lora_loss.py

1.42 kB
Deploy app from main@a3254bf (no paper/ binaries) 3 days ago
test_media_recommender.py

5.93 kB
Deploy app from main@a3254bf (no paper/ binaries) 3 days ago
test_pipeline.py

1.38 kB
Streaming fetch+featurize pipeline + 6× pyrodigal speedup + GCA version resolution about 1 month ago