Merge pull request #2 from mowcom/equation-update

Merge branch 'main' into equation-update

Updated allometric equations (incl. generic mangrove ELSE option), planting schedule defaults, and documentation

Update allometric equations with corrected coefficients - R. racemosa: TB = 2.0738 · (D²H)^0.67628 (was 1.938) - A. germinans: TB = 1.5595 · (D²H)^0.55864 (was 1.486) - Updated allometry.py, config files, dashboard documentation, and tests

Fix download functionality with working CSV generation - Implement proper download functions that generate fresh CSV files - Use current parameter values to regenerate data for download - Create properly formatted CSV files with clean numeric data - Fix button click handlers to actually work - Update environment with correct Gradio version

Fix download functionality and import issues - Replace broken File components with working DownloadButton - Fix import paths to work without PYTHONPATH - Store raw data for proper CSV downloads - Update README with correct instructions - Improve UI layout by removing weird row layouts

Update README with correct dashboard run command

Fix Gradio component parameters for production deployment

Add download functionality to dashboard tables

Fix: Use cumulative soil carbon for all tables and outputs; remove cumsum from table logic

Fix: Apply buffer multiplier to soil carbon in all calculations, plots, and summaries

chore: accept LaTeX fixes for dashboard accordions

fix: improve LaTeX formula compatibility for dashboard accordions

Fix LaTeX math delimiters in model explanation and ER calculation accordions for proper rendering in Gradio

chore: remove Key Metrics summary from dashboard UI

chore: UI/UX cleanup, grouped accordions, tooltips as labels, compact mortality layout, reset button

chore: code-cleanup UI/UX improvements, grouped accordions, tooltips as labels, compact mortality layout, reset button

WIP: update files before testing hugging-er build

fix: ensure to_native is at the very top of app.py and always in scope

fix: move to_native to top of file to guarantee scope and prevent NameError

fix: add to_native function to resolve NameError in update_declining_increment

fix: explicitly pass project_duration, buffer_pct, and soil_carbon as keyword arguments in initial call to update_declining_increment

fix: pass project_duration, buffer_pct, and soil_carbon as keyword arguments in initial call to update_declining_increment

fix: use year_1 to year_10 and subsequent for mortality inputs, matching YAML structure

feat: add mortality inputs for years 1-10 and subsequent, update both species, and fix UI assignment

fix: correct initial call to update_declining_increment to match new input signature

refactor: move model input UI to dashboard/inputs.py and fix initial call argument mismatch

feat: add independent input fields for both species (except mortality, which is mirrored) and update config accordingly

feat: make more model parameters user-adjustable in dashboard UI (species_A, project, carbon)

feat: update logo path, fix project details UI, add mortality and carbon details to key model inputs

fix: ensure LaTeX block is a raw string for correct rendering in dashboard header

feat: add Sequestr logo, statement, and LaTeX model equation to dashboard header

chore: add Sequestr logo image for dashboard header

Add model description and key input params UI to dashboard (steps 1 and 2)

Add Hugging Face Spaces YAML metadata to README

Remove unused files and add .cursorignore before Hugging Face deployment

UI improvements: move Key Metrics, update plot color, modularize cumulative soil carbon

Finalize modularization, clean up UI, prep for new features

Overwrite README with up-to-date modular, model-driven, and active/archived model documentation

Update README and model docs: reflect modular structure, active/archived models, and model-driven dashboard

Dashboard cleanup: remove per-hectare chart, improve table formatting, clarify table names and titles

Update README: describe discrete and continuous declining increment models, config flag, and display names

Add support for continuous declining increment growth; use display names for species in dashboard

Fix: ensure all plots and tables display full 30-year duration (remove .head(30) truncation)

Add editable planting schedule to Declining Increment tab with live dashboard updates

Refactor dashboard to show only the Declining Increment model tab

Update declining_increment.yaml to match notebook parameters (initial values, growth rates, mortality)

Update README and add model-specific READMEs for all growth models

Refactor declining_increment_growth to accumulate increments, fix negative height/DBH; enable robust multi-model support

Update dashboard with improved metrics and parameter handling - Fixed per hectare calculations, added milestone comparisons, improved summary stats, updated README