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agentontology
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Fetching metadata from the HF Docker repository...
move repo
#1
by
asthara
- opened
Jun 6, 2025
base:
refs/heads/main
←
from:
refs/pr/1
Discussion
Files changed
+3608
-49
Initial commit
52a25ecd
update gradio interface
58af908f
add modal.py
06cea181
Merge pull request #2 from mathysgrapotte/modal
01dc8202
Merge pull request #1 from mathysgrapotte/gradio-interface
173f0cee
add meta.yml tools
8c204516
use meta.yml tools
6df17b78
amend
ac0e6ad9
Merge pull request #3 from mathysgrapotte/add-initial-tools
bb182c17
add example call to the first agent
f9129e68
add comment
aa5ff5b6
Add tool to retrieve biotools information
ed9b1f89
Merge pull request #4 from mathysgrapotte/add-initial-tools
e1b14f68
Merge branch 'main' into add-biotools
5796e0c5
unify main and modal
33c19754
Merge pull request #5 from caraiz2001/add-biotools
50269b69
fetch_ontology from input
17816a17
unify modal with tools
7d87a4b5
merge main
8fa9d421
Merge pull request #6 from mathysgrapotte/modal
80f7bc0f
Merge branch 'main' into fetch-ontology-from-input
9359c594
override main.py changes
0ac2e8aa
allow model to check its answers
5d3aaeec
Merge pull request #7 from mathysgrapotte/fetch-ontology-from-input
69de5cf3
restructuring
76c15688
add id to ontology biotools
297f9afd
modify main to include biotools
ef78242d
Merge branch 'main' into add-bio-tools-ontology
159ccc4d
remove modal
571f4869
bug fixes
d455ff44
formatting
a1ccf75c
Merge pull request #8 from mathysgrapotte/restructuring
094c2ef4
Update tools/meta_yml_tools.py
c21cdfa3
Merge pull request #9 from caraiz2001/add-bio-tools-ontology
68dc808a
add bio.tools to the main function and outline the structure with missing TODOs
65456bd5
Merge pull request #10 from mathysgrapotte/more-restructuring
aac98d40
slightly change prompts to return lists of formats instead of single formats and added output support
538e5b11
change search_edam tool so that it returns strings instead of thing classes so that the model can directly pass those into other functions later
fe5b81aa
add type hints for serach ontology
ccceb100
now works with a dictionary.
6cb2b11d
add nice looking interface
d5fe8a1d
in gradio app, we now output discovered edam ontologies and their links to an ontology browser
d5f28538
remove emojis
a40bde52
adding smollagent logs to the output
a25664c5
center logs
33e0ffcd
collapsable logs
15110d33
write readme
f140fbe0
add progress bar
94159f09
Merge pull request #15 from mathysgrapotte/cute-gradio
b8d1fb23
add rotating nf-core apple and confetis upon completion
2c149d69
add outputs
bc0cb2b7
Merge branch 'cute-gradio' into update-meta-yml-with-confetis
1a536ab2
asthara
Notredame's lab org
Jun 6, 2025
No description provided.
asthara
changed pull request status to
open
Jun 6, 2025
fix bug for I/O display
f78c1b6a
Merge pull request #17 from mathysgrapotte/update-meta-yml-with-confetis
129b0206
add video
189191c2
Merge pull request #14 from mathysgrapotte/readme
e34a3ec2
delete embeding of video
d3d91218
Merge pull request #18 from mathysgrapotte/readme
1476256b
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