Update script_for_automation.py

script_for_automation.py

@@ -480,16 +480,6 @@ def drive_process():
             gold_standard_interactions_json = json.loads(gold_standard_json["interactions"])
             gold_standard_trials_json = json.loads(gold_standard_json["trials"])
 
-               
-            # Convert to yaml
-            completed_gold_standard_planting_json = sanitize_json_for_yaml(gold_standard_planting_json)
-            completed_gold_standard_interactions_json = sanitize_json_for_yaml(gold_standard_interactions_json)
-            completed_gold_standard_trials_json = sanitize_json_for_yaml(gold_standard_trials_json)
-
-            completed_processed_farm_activity_json = sanitize_json_for_yaml(processed_farm_activity_json)
-            completed_processed_interactions_json = sanitize_json_for_yaml(processed_interactions_json)
-            completed_processed_trials_json = sanitize_json_for_yaml(processed_trials_json)
-
             
             print("PROCESSING SPECIFICATIONS!!!!!!!!!!!!!!!")
             #processed_farm_activity_json, processed_interactions_json, processed_trials_json = process_specifications(proc_spec)
@@ -509,6 +499,15 @@ def drive_process():
             differences_interactions = list(diff(gold_standard_interactions_json, processed_interactions_json))
             differences_trials = list(diff(gold_standard_trials_json, processed_trials_json))
 
+            # Convert to yaml
+            completed_gold_standard_planting_json = sanitize_json_for_yaml(gold_standard_planting_json)
+            completed_gold_standard_interactions_json = sanitize_json_for_yaml(gold_standard_interactions_json)
+            completed_gold_standard_trials_json = sanitize_json_for_yaml(gold_standard_trials_json)
+
+            completed_processed_farm_activity_json = sanitize_json_for_yaml(processed_farm_activity_json)
+            completed_processed_interactions_json = sanitize_json_for_yaml(processed_interactions_json)
+            completed_processed_trials_json = sanitize_json_for_yaml(processed_trials_json)
+
             json_diff = {
                 "planting": differences_planting,
                 "interactions": differences_interactions,