richiam commited on
Commit
905074c
·
verified ·
1 Parent(s): 55738f8

Upload folder using huggingface_hub

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. .gitattributes +25 -0
  2. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.5_ALL_FIELDS.csv.gz +3 -0
  3. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.5_FIELD_CLUSTER_METRICS.csv +14 -0
  4. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.6_ALL_FIELDS.csv.gz +3 -0
  5. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.6_FIELD_CLUSTER_METRICS.csv +14 -0
  6. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.7_ALL_FIELDS.csv.gz +3 -0
  7. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.7_FIELD_CLUSTER_METRICS.csv +14 -0
  8. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.8_ALL_FIELDS.csv.gz +3 -0
  9. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.8_FIELD_CLUSTER_METRICS.csv +14 -0
  10. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.9_ALL_FIELDS.csv.gz +3 -0
  11. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.9_FIELD_CLUSTER_METRICS.csv +14 -0
  12. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.5_ALL_FIELDS.csv.gz +3 -0
  13. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.5_FIELD_CLUSTER_METRICS.csv +14 -0
  14. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.6_ALL_FIELDS.csv.gz +3 -0
  15. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.6_FIELD_CLUSTER_METRICS.csv +14 -0
  16. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.7_ALL_FIELDS.csv.gz +3 -0
  17. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.7_FIELD_CLUSTER_METRICS.csv +14 -0
  18. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.8_ALL_FIELDS.csv.gz +3 -0
  19. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.8_FIELD_CLUSTER_METRICS.csv +14 -0
  20. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.9_ALL_FIELDS.csv.gz +3 -0
  21. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.9_FIELD_CLUSTER_METRICS.csv +14 -0
  22. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.5_ALL_FIELDS.csv.gz +3 -0
  23. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.5_FIELD_CLUSTER_METRICS.csv +14 -0
  24. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.6_ALL_FIELDS.csv.gz +3 -0
  25. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.6_FIELD_CLUSTER_METRICS.csv +14 -0
  26. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.7_ALL_FIELDS.csv.gz +3 -0
  27. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.7_FIELD_CLUSTER_METRICS.csv +14 -0
  28. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.8_ALL_FIELDS.csv.gz +3 -0
  29. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.8_FIELD_CLUSTER_METRICS.csv +14 -0
  30. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.9_ALL_FIELDS.csv.gz +3 -0
  31. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.9_FIELD_CLUSTER_METRICS.csv +14 -0
  32. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.5_ALL_FIELDS.csv.gz +3 -0
  33. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.5_FIELD_CLUSTER_METRICS.csv +14 -0
  34. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.6_ALL_FIELDS.csv.gz +3 -0
  35. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.6_FIELD_CLUSTER_METRICS.csv +14 -0
  36. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.7_ALL_FIELDS.csv.gz +3 -0
  37. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.7_FIELD_CLUSTER_METRICS.csv +14 -0
  38. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.8_ALL_FIELDS.csv.gz +3 -0
  39. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.8_FIELD_CLUSTER_METRICS.csv +14 -0
  40. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.9_ALL_FIELDS.csv.gz +3 -0
  41. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.9_FIELD_CLUSTER_METRICS.csv +14 -0
  42. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.5_ALL_FIELDS.csv.gz +3 -0
  43. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.5_FIELD_CLUSTER_METRICS.csv +14 -0
  44. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.6_ALL_FIELDS.csv.gz +3 -0
  45. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.6_FIELD_CLUSTER_METRICS.csv +14 -0
  46. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.7_ALL_FIELDS.csv.gz +3 -0
  47. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.7_FIELD_CLUSTER_METRICS.csv +14 -0
  48. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.8_ALL_FIELDS.csv.gz +3 -0
  49. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.8_FIELD_CLUSTER_METRICS.csv +14 -0
  50. data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.9_ALL_FIELDS.csv.gz +3 -0
.gitattributes CHANGED
@@ -100,3 +100,28 @@ data/clustering/model=bioformers__bioformer-8L/min=5/t=0.6_ALL_FIELDS.csv.gz fil
100
  data/clustering/model=bioformers__bioformer-8L/min=5/t=0.7_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
101
  data/clustering/model=bioformers__bioformer-8L/min=5/t=0.8_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
102
  data/clustering/model=bioformers__bioformer-8L/min=5/t=0.9_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
100
  data/clustering/model=bioformers__bioformer-8L/min=5/t=0.7_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
101
  data/clustering/model=bioformers__bioformer-8L/min=5/t=0.8_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
102
  data/clustering/model=bioformers__bioformer-8L/min=5/t=0.9_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
103
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.5_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
104
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.6_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
105
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.7_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
106
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.8_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
107
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.9_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
108
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.5_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
109
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.6_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
110
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.7_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
111
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.8_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
112
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.9_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
113
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.5_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
114
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.6_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
115
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.7_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
116
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.8_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
117
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.9_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
118
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.5_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
119
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.6_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
120
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.7_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
121
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.8_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
122
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.9_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
123
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.5_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
124
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.6_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
125
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.7_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
126
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.8_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
127
+ data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.9_ALL_FIELDS.csv.gz filter=lfs diff=lfs merge=lfs -text
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.5_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:513a9762f3817c33217b1a07484137c43a428cded889cba62c3fb23ad1f3982d
3
+ size 1563340
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.5_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ desalting_process,3720,3720,2,0.8788251876831055,0.32694485661171474,10,0.5
3
+ elution_buffer,3530,3527,1,,,10,0.5
4
+ enzyme_name,7975,7975,1,,,10,0.5
5
+ expression_strain,5677,5677,1,,,10,0.5
6
+ inducer,7889,7883,1,,,10,0.5
7
+ induction_temperature,3656,3656,1,,,10,0.5
8
+ lysis_buffer,3714,3714,1,,,10,0.5
9
+ medium_name,4806,4806,1,,,10,0.5
10
+ molecular_weight,295,295,1,,,10,0.5
11
+ organism_source,6292,6292,1,,,10,0.5
12
+ plasmid,5480,5480,1,,,10,0.5
13
+ source_key,8021,8021,1,,,10,0.5
14
+ strain,2444,2444,1,,,10,0.5
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.6_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6bbf81fd78d8f1cbf4b7ef211fab3cec2cc058e4846478861e1288cc178fd553
3
+ size 1563662
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.6_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ desalting_process,3720,3719,2,0.8745836019515991,0.4613648418938652,10,0.6
3
+ elution_buffer,3530,3523,1,,,10,0.6
4
+ enzyme_name,7975,7975,1,,,10,0.6
5
+ expression_strain,5677,5677,1,,,10,0.6
6
+ inducer,7889,7883,1,,,10,0.6
7
+ induction_temperature,3656,3656,1,,,10,0.6
8
+ lysis_buffer,3714,3705,1,,,10,0.6
9
+ medium_name,4806,4803,1,,,10,0.6
10
+ molecular_weight,295,295,1,,,10,0.6
11
+ organism_source,6292,6292,1,,,10,0.6
12
+ plasmid,5480,5480,1,,,10,0.6
13
+ source_key,8021,8021,1,,,10,0.6
14
+ strain,2444,2444,1,,,10,0.6
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.7_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:42f7884e5a3479c863dcac7a43ff0b678e110e987b904ea8051d51d4d0567eeb
3
+ size 1564555
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.7_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ lysis_buffer,3714,3709,2,0.8211964964866638,0.5488298847337124,10,0.7
3
+ desalting_process,3720,3718,4,0.816301703453064,1.1229649544580025,10,0.7
4
+ elution_buffer,3530,3525,2,0.7869019508361816,0.579096432376577,10,0.7
5
+ medium_name,4806,4803,2,0.7526958584785461,0.4563609629370891,10,0.7
6
+ enzyme_name,7975,7974,1,,,10,0.7
7
+ expression_strain,5677,5677,1,,,10,0.7
8
+ inducer,7889,7882,1,,,10,0.7
9
+ induction_temperature,3656,3655,1,,,10,0.7
10
+ molecular_weight,295,295,1,,,10,0.7
11
+ organism_source,6292,6292,1,,,10,0.7
12
+ plasmid,5480,5478,1,,,10,0.7
13
+ source_key,8021,8021,1,,,10,0.7
14
+ strain,2444,2444,1,,,10,0.7
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.8_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:09c24a6ba84db21e857b1e153aba5bfbcbdbd9e27881cf51671c0a14d702d4ed
3
+ size 1565816
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.8_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ induction_temperature,3656,3655,2,0.8691748380661011,0.4757545827342129,10,0.8
3
+ lysis_buffer,3714,3704,3,0.8055402636528015,0.44524319910912186,10,0.8
4
+ desalting_process,3720,3717,6,0.7704578042030334,1.2159110251474845,10,0.8
5
+ elution_buffer,3530,3522,4,0.6940657496452332,0.8532043705317911,10,0.8
6
+ medium_name,4806,4802,4,0.6845597624778748,0.983759543218852,10,0.8
7
+ enzyme_name,7975,7965,1,,,10,0.8
8
+ expression_strain,5677,5676,1,,,10,0.8
9
+ inducer,7889,7878,1,,,10,0.8
10
+ molecular_weight,295,295,1,,,10,0.8
11
+ organism_source,6292,6291,1,,,10,0.8
12
+ plasmid,5480,5477,1,,,10,0.8
13
+ source_key,8021,8021,1,,,10,0.8
14
+ strain,2444,2443,1,,,10,0.8
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.9_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7724dc75ee91980bad47598dc16b204cfdf3f90b768d4831b2ad618911c883d1
3
+ size 1581109
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=10/t=0.9_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ induction_temperature,3656,3652,5,0.8086934685707092,1.0280707039053247,10,0.9
3
+ expression_strain,5677,5668,3,0.6822381615638733,0.699462771299864,10,0.9
4
+ plasmid,5480,5467,3,0.6482812762260437,0.7840006829081471,10,0.9
5
+ organism_source,6292,6291,4,0.5304650068283081,1.4035409376991355,10,0.9
6
+ lysis_buffer,3714,3700,8,0.38641488552093506,1.4458285488360456,10,0.9
7
+ desalting_process,3720,3710,13,0.36983489990234375,2.5601425756037557,10,0.9
8
+ enzyme_name,7975,7968,7,0.36080387234687805,1.9962244744311233,10,0.9
9
+ elution_buffer,3530,3520,14,0.22809025645256042,2.0222147589390413,10,0.9
10
+ medium_name,4806,4798,17,0.21437640488147736,2.4395763183588346,10,0.9
11
+ inducer,7889,7877,4,0.19038663804531097,1.0384674090815986,10,0.9
12
+ molecular_weight,295,292,1,,,10,0.9
13
+ source_key,8021,8021,1,,,10,0.9
14
+ strain,2444,2434,1,,,10,0.9
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.5_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:99c8cecb4d8b1bd25d08048d18976b03f178846743d5064ffd004e220aa249b6
3
+ size 1563520
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.5_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ elution_buffer,3530,3530,2,0.8792910575866699,0.44481611387376074,2,0.5
3
+ desalting_process,3720,3720,2,0.8788251876831055,0.32694485661171474,2,0.5
4
+ inducer,7889,7889,2,0.8503222465515137,0.2637742658188704,2,0.5
5
+ enzyme_name,7975,7975,1,,,2,0.5
6
+ expression_strain,5677,5677,1,,,2,0.5
7
+ induction_temperature,3656,3656,1,,,2,0.5
8
+ lysis_buffer,3714,3714,1,,,2,0.5
9
+ medium_name,4806,4806,1,,,2,0.5
10
+ molecular_weight,295,295,1,,,2,0.5
11
+ organism_source,6292,6292,1,,,2,0.5
12
+ plasmid,5480,5480,1,,,2,0.5
13
+ source_key,8021,8021,1,,,2,0.5
14
+ strain,2444,2444,1,,,2,0.5
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.6_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5af626f88895afa6237dbe45dbdae7fa0cf3515d2aff42e21d4ee71ab6c45104
3
+ size 1564207
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.6_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ lysis_buffer,3714,3714,2,0.8806324601173401,0.3936388353819188,2,0.6
3
+ desalting_process,3720,3719,2,0.8745836019515991,0.4613648418938652,2,0.6
4
+ inducer,7889,7889,2,0.8503222465515137,0.2637742658188704,2,0.6
5
+ medium_name,4806,4805,2,0.8354217410087585,1.4161783537710249,2,0.6
6
+ elution_buffer,3530,3530,4,0.833047091960907,1.1868684020509916,2,0.6
7
+ enzyme_name,7975,7975,1,,,2,0.6
8
+ expression_strain,5677,5677,1,,,2,0.6
9
+ induction_temperature,3656,3656,1,,,2,0.6
10
+ molecular_weight,295,295,1,,,2,0.6
11
+ organism_source,6292,6292,1,,,2,0.6
12
+ plasmid,5480,5480,1,,,2,0.6
13
+ source_key,8021,8021,1,,,2,0.6
14
+ strain,2444,2444,1,,,2,0.6
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.7_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0c264c5b36d5273f8850f01f056266227d5e08dec948ef6844149b530db76be3
3
+ size 1564909
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.7_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ plasmid,5480,5480,2,0.915432870388031,0.19415939524171427,2,0.7
3
+ inducer,7889,7888,2,0.8503597378730774,0.263748629939348,2,0.7
4
+ desalting_process,3720,3719,11,0.8130825757980347,1.5616976510345681,2,0.7
5
+ lysis_buffer,3714,3714,4,0.7766733765602112,0.6353328162586326,2,0.7
6
+ medium_name,4806,4804,3,0.713419497013092,1.4079525854875765,2,0.7
7
+ elution_buffer,3530,3529,5,0.6628036499023438,0.9329214162393397,2,0.7
8
+ enzyme_name,7975,7974,1,,,2,0.7
9
+ expression_strain,5677,5677,1,,,2,0.7
10
+ induction_temperature,3656,3655,1,,,2,0.7
11
+ molecular_weight,295,295,1,,,2,0.7
12
+ organism_source,6292,6292,1,,,2,0.7
13
+ source_key,8021,8021,1,,,2,0.7
14
+ strain,2444,2444,1,,,2,0.7
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.8_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f42541a798f5cb931d8d42ac4f1890fad5ee668ee89325ac01fe8177539fb6bc
3
+ size 1566626
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.8_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ plasmid,5480,5479,2,0.9155323505401611,0.19408247138542226,2,0.8
3
+ induction_temperature,3656,3655,2,0.8691748380661011,0.4757545827342129,2,0.8
4
+ enzyme_name,7975,7973,5,0.7250778675079346,1.709757453674736,2,0.8
5
+ lysis_buffer,3714,3713,8,0.7195822596549988,0.5859150125884109,2,0.8
6
+ desalting_process,3720,3719,18,0.6896914839744568,1.5744086276947111,2,0.8
7
+ elution_buffer,3530,3530,14,0.5306541919708252,1.0595589868233841,2,0.8
8
+ medium_name,4806,4805,9,0.5210984945297241,1.4946206330399565,2,0.8
9
+ inducer,7889,7888,4,0.45318031311035156,0.6350327403873097,2,0.8
10
+ expression_strain,5677,5676,1,,,2,0.8
11
+ molecular_weight,295,295,1,,,2,0.8
12
+ organism_source,6292,6291,1,,,2,0.8
13
+ source_key,8021,8021,1,,,2,0.8
14
+ strain,2444,2443,1,,,2,0.8
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.9_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e91b0ee143d25d311323a90fb1aecfca92db42c2e1dff3a67012a18c5c1d4e75
3
+ size 1580749
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=2/t=0.9_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ molecular_weight,295,295,2,0.8208003044128418,0.5787193554050322,2,0.9
3
+ induction_temperature,3656,3654,13,0.7317935228347778,1.0625015025866578,2,0.9
4
+ strain,2444,2442,4,0.6633882522583008,1.0660405653605156,2,0.9
5
+ expression_strain,5677,5675,7,0.6499571800231934,0.9568541574965043,2,0.9
6
+ plasmid,5480,5480,15,0.523720383644104,1.573519396993879,2,0.9
7
+ organism_source,6292,6291,9,0.45336082577705383,1.6938654267524695,2,0.9
8
+ desalting_process,3720,3719,39,0.2843758463859558,1.6991489911678785,2,0.9
9
+ lysis_buffer,3714,3713,25,0.2541319727897644,1.1128311955379044,2,0.9
10
+ enzyme_name,7975,7973,22,0.2349632978439331,1.7377421196901195,2,0.9
11
+ elution_buffer,3530,3528,39,0.20281639695167542,1.45562300219501,2,0.9
12
+ medium_name,4806,4802,49,0.1351454108953476,1.571778268802611,2,0.9
13
+ inducer,7889,7888,11,-0.6601330637931824,0.8794936955604605,2,0.9
14
+ source_key,8021,8021,1,,,2,0.9
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.5_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6646df24d9c2d3175b13ea3236eb7de6f52b7baeb2ef742b23aded24428deda3
3
+ size 1563331
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.5_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ desalting_process,3720,3710,1,,,20,0.5
3
+ elution_buffer,3530,3527,1,,,20,0.5
4
+ enzyme_name,7975,7975,1,,,20,0.5
5
+ expression_strain,5677,5677,1,,,20,0.5
6
+ inducer,7889,7883,1,,,20,0.5
7
+ induction_temperature,3656,3656,1,,,20,0.5
8
+ lysis_buffer,3714,3714,1,,,20,0.5
9
+ medium_name,4806,4806,1,,,20,0.5
10
+ molecular_weight,295,295,1,,,20,0.5
11
+ organism_source,6292,6292,1,,,20,0.5
12
+ plasmid,5480,5480,1,,,20,0.5
13
+ source_key,8021,8021,1,,,20,0.5
14
+ strain,2444,2444,1,,,20,0.5
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.6_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:da821b09fee4ca12bdca002e6b03372e6a58962933e7e9104e1aa50ce4ec73dc
3
+ size 1563662
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.6_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ desalting_process,3720,3719,2,0.8745836019515991,0.4613648418938652,20,0.6
3
+ elution_buffer,3530,3523,1,,,20,0.6
4
+ enzyme_name,7975,7975,1,,,20,0.6
5
+ expression_strain,5677,5677,1,,,20,0.6
6
+ inducer,7889,7883,1,,,20,0.6
7
+ induction_temperature,3656,3656,1,,,20,0.6
8
+ lysis_buffer,3714,3705,1,,,20,0.6
9
+ medium_name,4806,4803,1,,,20,0.6
10
+ molecular_weight,295,295,1,,,20,0.6
11
+ organism_source,6292,6292,1,,,20,0.6
12
+ plasmid,5480,5480,1,,,20,0.6
13
+ source_key,8021,8021,1,,,20,0.6
14
+ strain,2444,2444,1,,,20,0.6
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.7_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:635f2ac4618df19cfa67fdb96283df9b512631692a510e3631b066e6b75e650e
3
+ size 1564531
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.7_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ desalting_process,3720,3719,3,0.8212870955467224,0.9383764949385668,20,0.7
3
+ elution_buffer,3530,3525,2,0.7869019508361816,0.579096432376577,20,0.7
4
+ enzyme_name,7975,7974,1,,,20,0.7
5
+ expression_strain,5677,5677,1,,,20,0.7
6
+ inducer,7889,7882,1,,,20,0.7
7
+ induction_temperature,3656,3655,1,,,20,0.7
8
+ lysis_buffer,3714,3697,1,,,20,0.7
9
+ medium_name,4806,4790,1,,,20,0.7
10
+ molecular_weight,295,295,1,,,20,0.7
11
+ organism_source,6292,6292,1,,,20,0.7
12
+ plasmid,5480,5478,1,,,20,0.7
13
+ source_key,8021,8021,1,,,20,0.7
14
+ strain,2444,2444,1,,,20,0.7
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.8_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3be1935362e36fa6f1aa5542360ddd1594cf032f0ff48371569baa864dbba83a
3
+ size 1566162
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.8_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ induction_temperature,3656,3655,2,0.8691748380661011,0.4757545827342129,20,0.8
3
+ lysis_buffer,3714,3693,2,0.8465916514396667,0.26676832280696755,20,0.8
4
+ desalting_process,3720,3717,4,0.7915120720863342,0.7802010269392264,20,0.8
5
+ elution_buffer,3530,3521,3,0.7238301038742065,0.5474480436027243,20,0.8
6
+ medium_name,4806,4801,3,0.6965180039405823,0.8222198481818616,20,0.8
7
+ enzyme_name,7975,7965,1,,,20,0.8
8
+ expression_strain,5677,5676,1,,,20,0.8
9
+ inducer,7889,7878,1,,,20,0.8
10
+ molecular_weight,295,295,1,,,20,0.8
11
+ organism_source,6292,6291,1,,,20,0.8
12
+ plasmid,5480,5477,1,,,20,0.8
13
+ source_key,8021,8021,1,,,20,0.8
14
+ strain,2444,2443,1,,,20,0.8
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.9_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5419a12417029461bbb3286236a03529e1958b8c73f1fb10d644b8cb2f4c534d
3
+ size 1578370
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=20/t=0.9_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ induction_temperature,3656,3635,3,0.8374854326248169,0.5420911725578342,20,0.9
3
+ organism_source,6292,6280,2,0.7457679510116577,0.5979571708958273,20,0.9
4
+ lysis_buffer,3714,3690,5,0.4458244740962982,1.2043708857254256,20,0.9
5
+ desalting_process,3720,3709,8,0.4315110743045807,1.9100082672239802,20,0.9
6
+ enzyme_name,7975,7961,4,0.41551539301872253,1.9535357949136247,20,0.9
7
+ elution_buffer,3530,3490,7,0.30675801634788513,1.9956534281630398,20,0.9
8
+ inducer,7889,7857,2,0.26399827003479004,1.0579343831647887,20,0.9
9
+ medium_name,4806,4786,10,0.2513596713542938,2.453192151054448,20,0.9
10
+ expression_strain,5677,5647,1,,,20,0.9
11
+ molecular_weight,295,292,1,,,20,0.9
12
+ plasmid,5480,5445,1,,,20,0.9
13
+ source_key,8021,8021,1,,,20,0.9
14
+ strain,2444,2434,1,,,20,0.9
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.5_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:51c57e710a5eabc1521bbfb86e41658dabd2d06877fecf265d4fec5aeac38fec
3
+ size 1563331
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.5_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ desalting_process,3720,3710,1,,,30,0.5
3
+ elution_buffer,3530,3527,1,,,30,0.5
4
+ enzyme_name,7975,7975,1,,,30,0.5
5
+ expression_strain,5677,5677,1,,,30,0.5
6
+ inducer,7889,7883,1,,,30,0.5
7
+ induction_temperature,3656,3656,1,,,30,0.5
8
+ lysis_buffer,3714,3714,1,,,30,0.5
9
+ medium_name,4806,4806,1,,,30,0.5
10
+ molecular_weight,295,295,1,,,30,0.5
11
+ organism_source,6292,6292,1,,,30,0.5
12
+ plasmid,5480,5480,1,,,30,0.5
13
+ source_key,8021,8021,1,,,30,0.5
14
+ strain,2444,2444,1,,,30,0.5
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.6_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:903f6eb425a18960941a7aa1ab0dd49669eeaf09a93ca12bb8cd9d0fa3a6287c
3
+ size 1563437
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.6_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ desalting_process,3720,3694,1,,,30,0.6
3
+ elution_buffer,3530,3523,1,,,30,0.6
4
+ enzyme_name,7975,7975,1,,,30,0.6
5
+ expression_strain,5677,5677,1,,,30,0.6
6
+ inducer,7889,7883,1,,,30,0.6
7
+ induction_temperature,3656,3656,1,,,30,0.6
8
+ lysis_buffer,3714,3705,1,,,30,0.6
9
+ medium_name,4806,4803,1,,,30,0.6
10
+ molecular_weight,295,295,1,,,30,0.6
11
+ organism_source,6292,6292,1,,,30,0.6
12
+ plasmid,5480,5480,1,,,30,0.6
13
+ source_key,8021,8021,1,,,30,0.6
14
+ strain,2444,2444,1,,,30,0.6
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.7_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:074f9f1c39a1f31f59a36bc6c811434fd6f95d5c846662952b5b3b2e6b508d1c
3
+ size 1564444
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.7_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ desalting_process,3720,3709,2,0.8478197455406189,0.5635797647378765,30,0.7
3
+ elution_buffer,3530,3504,1,,,30,0.7
4
+ enzyme_name,7975,7974,1,,,30,0.7
5
+ expression_strain,5677,5677,1,,,30,0.7
6
+ inducer,7889,7882,1,,,30,0.7
7
+ induction_temperature,3656,3655,1,,,30,0.7
8
+ lysis_buffer,3714,3697,1,,,30,0.7
9
+ medium_name,4806,4790,1,,,30,0.7
10
+ molecular_weight,295,295,1,,,30,0.7
11
+ organism_source,6292,6292,1,,,30,0.7
12
+ plasmid,5480,5478,1,,,30,0.7
13
+ source_key,8021,8021,1,,,30,0.7
14
+ strain,2444,2444,1,,,30,0.7
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.8_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:048c377780adaa360c8622546970d349eca8c0a01e211f4dad1f59adbc46742b
3
+ size 1564598
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.8_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ desalting_process,3720,3707,3,0.8040115833282471,0.47464063306159215,30,0.8
3
+ elution_buffer,3530,3480,1,,,30,0.8
4
+ enzyme_name,7975,7965,1,,,30,0.8
5
+ expression_strain,5677,5676,1,,,30,0.8
6
+ inducer,7889,7878,1,,,30,0.8
7
+ induction_temperature,3656,3632,1,,,30,0.8
8
+ lysis_buffer,3714,3671,1,,,30,0.8
9
+ medium_name,4806,4754,1,,,30,0.8
10
+ molecular_weight,295,295,1,,,30,0.8
11
+ organism_source,6292,6291,1,,,30,0.8
12
+ plasmid,5480,5477,1,,,30,0.8
13
+ source_key,8021,8021,1,,,30,0.8
14
+ strain,2444,2443,1,,,30,0.8
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.9_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:903aa73be0e08d5913aaa74f4c56fb2e0c8bdc279d20dcb5a312f9870a774b17
3
+ size 1576390
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=30/t=0.9_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ induction_temperature,3656,3642,3,0.8519780039787292,0.5133759606798728,30,0.9
3
+ lysis_buffer,3714,3638,2,0.5913897752761841,1.081265668451442,30,0.9
4
+ desalting_process,3720,3676,5,0.5525792837142944,1.5523264596629696,30,0.9
5
+ enzyme_name,7975,7927,2,0.5090072751045227,0.7869680823396571,30,0.9
6
+ elution_buffer,3530,3496,6,0.3129810094833374,1.7492070292575785,30,0.9
7
+ medium_name,4806,4769,7,0.2724228799343109,1.9800312288739674,30,0.9
8
+ inducer,7889,7857,2,0.26399827003479004,1.0579343831647887,30,0.9
9
+ expression_strain,5677,5647,1,,,30,0.9
10
+ molecular_weight,295,292,1,,,30,0.9
11
+ organism_source,6292,6258,1,,,30,0.9
12
+ plasmid,5480,5445,1,,,30,0.9
13
+ source_key,8021,8021,1,,,30,0.9
14
+ strain,2444,2434,1,,,30,0.9
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.5_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6e129b782e751175f5145f5c0396235a238f3518519ae20d661fb4d1ef123e7f
3
+ size 1563375
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.5_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ desalting_process,3720,3720,2,0.8788251876831055,0.32694485661171474,5,0.5
3
+ inducer,7889,7889,2,0.8503222465515137,0.2637742658188704,5,0.5
4
+ elution_buffer,3530,3527,1,,,5,0.5
5
+ enzyme_name,7975,7975,1,,,5,0.5
6
+ expression_strain,5677,5677,1,,,5,0.5
7
+ induction_temperature,3656,3656,1,,,5,0.5
8
+ lysis_buffer,3714,3714,1,,,5,0.5
9
+ medium_name,4806,4806,1,,,5,0.5
10
+ molecular_weight,295,295,1,,,5,0.5
11
+ organism_source,6292,6292,1,,,5,0.5
12
+ plasmid,5480,5480,1,,,5,0.5
13
+ source_key,8021,8021,1,,,5,0.5
14
+ strain,2444,2444,1,,,5,0.5
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.6_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b2a76bc0de690955637ff4dbaf0b99fdda0728e529871ae65eeb518779159c79
3
+ size 1564154
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.6_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ lysis_buffer,3714,3714,2,0.8806324601173401,0.3936388353819188,5,0.6
3
+ desalting_process,3720,3719,2,0.8745836019515991,0.4613648418938652,5,0.6
4
+ elution_buffer,3530,3528,2,0.8544107675552368,0.8248842193717606,5,0.6
5
+ inducer,7889,7889,2,0.8503222465515137,0.2637742658188704,5,0.6
6
+ enzyme_name,7975,7975,1,,,5,0.6
7
+ expression_strain,5677,5677,1,,,5,0.6
8
+ induction_temperature,3656,3656,1,,,5,0.6
9
+ medium_name,4806,4803,1,,,5,0.6
10
+ molecular_weight,295,295,1,,,5,0.6
11
+ organism_source,6292,6292,1,,,5,0.6
12
+ plasmid,5480,5480,1,,,5,0.6
13
+ source_key,8021,8021,1,,,5,0.6
14
+ strain,2444,2444,1,,,5,0.6
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.7_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a9ab80857c0454cdce518210372f0381d298f1ec1b193d05746fec5e9f3649ea
3
+ size 1564925
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.7_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ inducer,7889,7888,2,0.8503597378730774,0.263748629939348,5,0.7
3
+ desalting_process,3720,3719,6,0.813032329082489,2.3827400948441695,5,0.7
4
+ lysis_buffer,3714,3714,3,0.7767648696899414,0.5740359018015954,5,0.7
5
+ elution_buffer,3530,3530,3,0.7710232734680176,0.5370489860484522,5,0.7
6
+ medium_name,4806,4803,2,0.7526958584785461,0.4563609629370891,5,0.7
7
+ enzyme_name,7975,7974,1,,,5,0.7
8
+ expression_strain,5677,5677,1,,,5,0.7
9
+ induction_temperature,3656,3655,1,,,5,0.7
10
+ molecular_weight,295,295,1,,,5,0.7
11
+ organism_source,6292,6292,1,,,5,0.7
12
+ plasmid,5480,5478,1,,,5,0.7
13
+ source_key,8021,8021,1,,,5,0.7
14
+ strain,2444,2444,1,,,5,0.7
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.8_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:dfbf5e1ac8be6c2dc0eb52a2aa7d91c5d2026618b21e451db130ab3181e5e457
3
+ size 1566556
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.8_FIELD_CLUSTER_METRICS.csv ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ field,n_total,n_used,n_clusters,silhouette_cosine,davies_bouldin,min_community_size,threshold
2
+ induction_temperature,3656,3655,2,0.8691748380661011,0.4757545827342129,5,0.8
3
+ inducer,7889,7884,2,0.8510527610778809,0.2634310239361656,5,0.8
4
+ enzyme_name,7975,7970,2,0.756263017654419,0.6801263646371739,5,0.8
5
+ desalting_process,3720,3717,10,0.754392683506012,2.0968164704385255,5,0.8
6
+ lysis_buffer,3714,3714,6,0.725355863571167,0.6460456091979208,5,0.8
7
+ elution_buffer,3530,3525,6,0.6276204586029053,1.0165608568476268,5,0.8
8
+ medium_name,4806,4803,6,0.5776232481002808,1.2922019600394454,5,0.8
9
+ expression_strain,5677,5676,1,,,5,0.8
10
+ molecular_weight,295,295,1,,,5,0.8
11
+ organism_source,6292,6291,1,,,5,0.8
12
+ plasmid,5480,5477,1,,,5,0.8
13
+ source_key,8021,8021,1,,,5,0.8
14
+ strain,2444,2443,1,,,5,0.8
data/clustering/model=dmis-lab__biobert-large-cased-v1.1-mnli/min=5/t=0.9_ALL_FIELDS.csv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0ec9438eda2efecbd240582bb7af19e1892b8ca33f1680b521bd4138ee3d8026
3
+ size 1581999