README.md

metadata

title: HistoPath Agent
emoji: 🔬
colorFrom: purple
colorTo: blue
sdk: gradio
sdk_version: 5.7.0
app_file: app.py
pinned: false
python_version: 3.11.13
license: mit

🔬 HistoPath Agent

AI-Powered Histopathology Analysis Assistant for whole slide image analysis, segmentation, and captioning.

Features

• 📸 Whole Slide Image (WSI) Captioning
• 🔍 Cell and Tissue Segmentation
• 🏷️ Zero-Shot Classification
• 📊 Quantitative Analysis (TILs, Fibrosis)

Usage

1. Enter the passcode to access the application
2. Upload your histopathology image (.svs, .png, .jpg, .tif)
3. Enter your analysis request
4. View results in the Images and Data tabs

Environment Variables

Set these in your Hugging Face Spaces secrets:

• GRADIO_PASSWORD: Access passcode
• HUGGINGFACE_ACCESS_TOKEN: For accessing gated models
• ANTHROPIC_API_KEY: For Claude LLM (optional)
• OPENAI_API_KEY: For OpenAI models (optional)

Credits

Built with LazySlide, LangChain, and Gradio