Fix all TypeScript errors: remove unused imports, delete orphan reactflow components

feat: merge Rami's bioflow architecture with core-progress fixes

fix: restructure dashboard pages and fix 404 errors

feat: add molecular and protein visualization dashboard

feat: Complete BioFlow Orchestrator hackathon implementation

improve sidebar (cherry-picked from feat/raed-ui)

improve sidebar

chore: integrate UI snapshot from raed-ui branch

Improve UI and unify api, types and schemas