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copd-model-e

Tabular Classification
Scikit-learn
English
hierarchical
healthcare
ehr
copd
clinical-risk
tabular
scikit-learn
clustering
unsupervised
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copd-model-e / training /src /processing /mappings /README.md
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IamGrooooot
Model E: Unsupervised PCA + clustering risk stratification
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Mappings

This folder contains a range of mappings used within the processing stages of model E:

  • inhaler_mapping.json: Inhaler mappings for any Chapter 3 BNF code inhaler prescriptions present in the SafeHaven prescribing dataset. Information on NHS inhaler types, found here, was used to create the mapping.
  • test_mapping.json: A mapping created for any of the top 20 most frequently occurring lab tests, plus any lab tests found relevant for indicating COPD severity in Model A. This mapping creates a common name for a specific test and lists any related names the test may appear under within the SCI Store dataset.
  • Comorbidity feature review for models & clin summary update v2 May 2021.xlsx: A mapping between diagnosis names found in SMR01 and their associated comorbidities (taken from Model A).
  • diag_copd_resp_desc.json: DIAGDesc for COPD and respiratory admissions