SNS Paper - Borzoi FM Silicus (fine-tuned)
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Borzoi foundation model fine-tuned on synthetic genomes (Casimov et al., Fig S7-S8). • 10 items • Updated
Borzoi FM fine-tuned on random
Pre-trained Borzoi foundation model (johahi/borzoi-replicate-0) fine-tuned on the random synthetic genome with CUT&Tag H3K27me3 and H3K4me3 targets.
- Genome: Random genome (control)
- Base model:
johahi/borzoi-replicate-0 - Receptive field: 524 kb
- Resolution: 32 bp
- Paper: Casimov, Lifshitz et al., "Reverse engineering the genomic encodings of the pluripotent epigenome"
See the paper companion repository for full code and configs.
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