SNS Paper - Flashzoi Silicus (from scratch)
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Flashzoi trained from scratch on synthetic genomes (Casimov et al., Fig 5C, S7-S8). • 2 items • Updated
Flashzoi on silicusPlusCGDCreCtcfExonTE — Trained from Scratch
Borzoi architecture trained from random initialization on the silicusPlusCGDCreCtcfExonTE synthetic genome with CUT&Tag H3K27me3 and H3K4me3 targets.
- Genome: Silicus + CGD + CRE + CTCF + Exon + TE (telescope step 5, full)
- Architecture: Borzoi (from scratch, model name "flashzoi")
- Receptive field: 524 kb
- Resolution: 32 bp
- Paper: Casimov, Lifshitz et al., "Reverse engineering the genomic encodings of the pluripotent epigenome"
See the paper companion repository for full code and configs.
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