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README.md

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 license: cc-by-nc-4.0
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+---
+
+
+# FlashPPI: Linear-time prediction of proteome-scale microbial protein interactions
+
+This model is used for benchmarking on the held out E. coli benchmark set (https://huggingface.co/datasets/tattabio/ecoli_pdb_benchmark). See the paper details on benchmarking.
+
+The model trained on the full set is available here: https://huggingface.co/tattabio/flashppi.
+
+
+## Citing 
+If you use FlashPPI or our datasets in your research, please cite:
+
+```
+@article {Cornman2026FlashPPI,
+	author = {Cornman, Andre and Tranzillo, Matt and Zulaybar, Nicolo G and Bouzit, Imane and Hwang, Yunha},
+	title = {Linear-time prediction of proteome-scale microbial protein interactions},
+	year = {2026},
+	doi = {10.64898/2026.03.01.708874},
+	publisher = {Cold Spring Harbor Laboratory},
+	URL = {https://www.biorxiv.org/content/early/2026/03/02/2026.03.01.708874},
+	journal = {bioRxiv}
+}
+```