Improve model card with pipeline tag and paper details
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by
nielsr
HF Staff
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README.md
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license: mit
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---
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license: mit
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pipeline_tag: graph-ml
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# Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs
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This repository contains the model presented in the paper [Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs](https://huggingface.co/papers/2501.01644).
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## Abstract
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Biomedical Knowledge Graphs (BKGs) integrate diverse datasets to elucidate complex relationships within the biomedical field. Effective link prediction on these graphs can uncover valuable connections, such as potential novel drug-disease relations. We introduce a novel multimodal approach that unifies embeddings from specialized Language Models (LMs) with Graph Contrastive Learning (GCL) to enhance intra-entity relationships while employing a Knowledge Graph Embedding (KGE) model to capture inter-entity relationships for effective link prediction. To address limitations in existing BKGs, we present PrimeKG++, an enriched knowledge graph incorporating multimodal data, including biological sequences and textual descriptions for each entity type. By combining semantic and relational information in a unified representation, our approach demonstrates strong generalizability, enabling accurate link predictions even for unseen nodes. Experimental results on PrimeKG++ and the DrugBank drug-target interaction dataset demonstrate the effectiveness and robustness of our method across diverse biomedical datasets. Our source code, pre-trained models, and data are publicly available at this https URL
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## Code and Data
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The paper states that source code, pre-trained models, and data are publicly available. However, a direct link to a code repository was not provided in the context. Please refer to the paper for more details on accessing these resources.
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