File size: 7,514 Bytes
f51d9ed
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
"""
Cervical Type Classification Model

This module contains the BaseCNN model for classifying cervical images
into 3 transformation zone types.

Usage:
    from model import BaseCNN

    # Load pretrained model
    model = BaseCNN.from_pretrained("./")

    # Or create from scratch
    model = BaseCNN(
        layers=[32, 64, 128, 256],
        fc_layers=[256, 128],
        nr_classes=3
    )
"""

import json
from pathlib import Path

import torch
import torch.nn as nn

try:
    from safetensors.torch import load_file, save_file
    HAS_SAFETENSORS = True
except ImportError:
    HAS_SAFETENSORS = False


class BaseCNN(nn.Module):
    """
    Simple CNN for cervical type classification.

    Classifies cervical images into 3 transformation zone types:
    - Type 1: Transformation zone fully visible on ectocervix
    - Type 2: Transformation zone partially visible
    - Type 3: Transformation zone not visible (within endocervical canal)

    Args:
        layers: List of output channels for each conv layer. Default: [32, 64, 128, 256]
        kernel: Kernel size for conv layers. Default: 3
        padding: Padding for conv layers. Default: 1
        stride: Stride for conv layers. Default: 1
        batchnorm: Whether to use batch normalization. Default: True
        bn_pre_activ: Whether to apply BN before activation. Default: True
        activation: Activation function name. Default: 'ReLU'
        dropout: Dropout rate for FC layers. Default: 0.4
        pool: Whether to use max pooling after each conv. Default: True
        fc_layers: List of FC layer sizes. Default: [256, 128]
        nr_classes: Number of output classes. Default: 3
        in_channels: Number of input channels. Default: 3
    """

    def __init__(
        self,
        layers: list = None,
        kernel: int = 3,
        padding: int = 1,
        stride: int = 1,
        batchnorm: bool = True,
        bn_pre_activ: bool = True,
        activation: str = 'ReLU',
        dropout: float = 0.4,
        pool: bool = True,
        fc_layers: list = None,
        nr_classes: int = 3,
        in_channels: int = 3,
    ):
        super().__init__()

        # Store config for serialization
        self.config = {
            'layers': layers or [32, 64, 128, 256],
            'kernel': kernel,
            'padding': padding,
            'stride': stride,
            'batchnorm': batchnorm,
            'bn_pre_activ': bn_pre_activ,
            'activation': activation,
            'dropout': dropout,
            'pool': pool,
            'fc_layers': fc_layers or [256, 128],
            'nr_classes': nr_classes,
            'in_channels': in_channels,
        }

        layers = self.config['layers']
        fc_layers = self.config['fc_layers']

        # Activation function
        activation_fn = getattr(nn, activation)

        # Build convolutional layers (ModuleList to match original)
        self.conv_layers = nn.ModuleList()
        prev_channels = in_channels

        for out_channels in layers:
            self.conv_layers.append(
                nn.Conv2d(prev_channels, out_channels, kernel, stride, padding)
            )
            if batchnorm and bn_pre_activ:
                self.conv_layers.append(nn.BatchNorm2d(out_channels))
            self.conv_layers.append(activation_fn())
            if batchnorm and not bn_pre_activ:
                self.conv_layers.append(nn.BatchNorm2d(out_channels))
            if pool:
                self.conv_layers.append(nn.MaxPool2d(2, 2))
            prev_channels = out_channels

        # Global average pooling
        self.adaptive_pool = nn.AdaptiveAvgPool2d(1)

        # Build fully connected layers (ModuleList to match original)
        self.fc_layers = nn.ModuleList()
        prev_features = layers[-1]

        for fc_size in fc_layers:
            self.fc_layers.append(nn.Linear(prev_features, fc_size))
            self.fc_layers.append(activation_fn())
            self.fc_layers.append(nn.Dropout(dropout))
            prev_features = fc_size

        # Final classifier (separate, to match original)
        self.classifier = nn.Linear(prev_features, nr_classes)

    def forward(self, x: torch.Tensor) -> torch.Tensor:
        """
        Forward pass.

        Args:
            x: Input tensor of shape (batch_size, 3, 256, 256)

        Returns:
            Logits tensor of shape (batch_size, num_classes)
        """
        for layer in self.conv_layers:
            x = layer(x)

        x = self.adaptive_pool(x)
        x = x.view(x.size(0), -1)

        for layer in self.fc_layers:
            x = layer(x)

        x = self.classifier(x)
        return x

    @classmethod
    def from_pretrained(cls, model_path: str, device: str = 'cpu') -> 'BaseCNN':
        """
        Load a pretrained model from a directory.

        Args:
            model_path: Path to directory containing model files
            device: Device to load model on ('cpu' or 'cuda')

        Returns:
            Loaded model in eval mode
        """
        model_path = Path(model_path)

        # Load config
        config_path = model_path / 'config.json'
        with open(config_path, 'r') as f:
            config = json.load(f)

        # Create model
        model = cls(**config['model_config'])

        # Load weights (prefer safetensors)
        safetensors_path = model_path / 'model.safetensors'
        pytorch_path = model_path / 'pytorch_model.bin'

        if safetensors_path.exists() and HAS_SAFETENSORS:
            state_dict = load_file(str(safetensors_path), device=device)
        elif pytorch_path.exists():
            state_dict = torch.load(pytorch_path, map_location=device, weights_only=True)
        else:
            raise FileNotFoundError(f"No model weights found in {model_path}")

        model.load_state_dict(state_dict)
        model.to(device)
        model.eval()
        return model

    def save_pretrained(self, save_path: str) -> None:
        """
        Save model in Hugging Face compatible format.

        Args:
            save_path: Directory to save model files
        """
        save_path = Path(save_path)
        save_path.mkdir(parents=True, exist_ok=True)

        # Save config
        config = {
            'model_type': 'BaseCNN',
            'model_config': self.config,
            'num_labels': self.config['nr_classes'],
            'id2label': {
                '0': 'Type 1',
                '1': 'Type 2',
                '2': 'Type 3'
            },
            'label2id': {
                'Type 1': 0,
                'Type 2': 1,
                'Type 3': 2
            }
        }
        with open(save_path / 'config.json', 'w') as f:
            json.dump(config, f, indent=2)

        # Save weights
        state_dict = {k: v.contiguous() for k, v in self.state_dict().items()}

        # SafeTensors format (recommended)
        if HAS_SAFETENSORS:
            save_file(state_dict, str(save_path / 'model.safetensors'))

        # PyTorch format (backup)
        torch.save(state_dict, save_path / 'pytorch_model.bin')


# Label mappings
ID2LABEL = {0: 'Type 1', 1: 'Type 2', 2: 'Type 3'}
LABEL2ID = {'Type 1': 0, 'Type 2': 1, 'Type 3': 2}


if __name__ == '__main__':
    # Quick test
    model = BaseCNN()
    print(f"Model parameters: {sum(p.numel() for p in model.parameters()):,}")

    # Test forward pass
    x = torch.randn(1, 3, 256, 256)
    y = model(x)
    print(f"Input shape: {x.shape}")
    print(f"Output shape: {y.shape}")