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  1. beam_fa_s3/results.json +7 -0
  2. beam_fa_s42/oracle_timeline.jsonl +0 -0
  3. beam_fa_tweedie_s0/results.json +7 -0
  4. beam_fa_tweedie_s2/oracle_timeline.jsonl +0 -0
  5. beam_fa_tweedie_s42/oracle_timeline.jsonl +0 -0
  6. ddpp_beam_cvar_s0/active_loop_log.jsonl +0 -0
  7. ddpp_beam_cvar_s42/active_loop_log.jsonl +0 -0
  8. ddpp_beam_cvar_tweedie_s0/active_loop_log.jsonl +0 -0
  9. ddpp_beam_cvar_tweedie_s1/oracle_timeline.jsonl +0 -0
  10. ddpp_cvar_s2/oracle_timeline_N600_cvar.jsonl +0 -0
  11. ddpp_cvar_s2/results.jsonl +1 -0
  12. ddpp_cvar_s3/oracle_timeline_N600_cvar.jsonl +0 -0
  13. ddpp_cvar_s3/results.jsonl +1 -0
  14. ddpp_cvar_s3/summary.json +12 -0
  15. ddpp_lb_cvar_expA_s3/collected_molecules.csv +0 -0
  16. ddpp_lb_cvar_expA_s3/results.json +12 -0
  17. ddpp_lb_cvar_expA_s42/collected_molecules.csv +0 -0
  18. ddpp_lb_cvar_expA_s42/results.json +12 -0
  19. ddpp_lb_nocvar_expA_s0/collected_molecules.csv +0 -0
  20. ddpp_mcts_cvar_s0/active_loop_log.jsonl +0 -0
  21. ddpp_mcts_cvar_s0/oracle_timeline.jsonl +0 -0
  22. ddpp_mcts_cvar_s0/results.json +11 -0
  23. ddpp_mcts_cvar_s1/results.json +11 -0
  24. ddpp_mcts_cvar_s2/results.json +11 -0
  25. ddpp_mcts_cvar_tweedie_s2/active_loop_log.jsonl +0 -0
  26. ddpp_mcts_cvar_tweedie_s2/oracle_timeline.jsonl +0 -0
  27. ddpp_mcts_cvar_tweedie_s42/oracle_timeline.jsonl +0 -0
  28. ddpp_nocvar_s2/oracle_timeline_N600_no_cvar.jsonl +0 -0
  29. ddpp_nocvar_s2/results.jsonl +1 -0
  30. ddpp_nocvar_s2/summary.json +12 -0
  31. ddpp_ns_llada16_s1/active_loop_log.jsonl +0 -0
  32. ddpp_ns_llada16_s1/oracle_timeline.jsonl +0 -0
  33. ddpp_ns_llada16_s1/results.json +10 -0
  34. ddpp_ns_llada16_s2/active_loop_log.jsonl +0 -0
  35. ddpp_ns_llada16_s2/oracle_timeline.jsonl +0 -0
  36. ddpp_ns_llada16_s2/results.json +10 -0
  37. ddpp_ns_llada1_s1/active_loop_log.jsonl +0 -0
  38. ddpp_ns_llada4_s0/oracle_timeline.jsonl +0 -0
  39. ddpp_ns_llada4_s1/oracle_timeline.jsonl +0 -0
  40. ddpp_ns_llada4_s1/results.json +10 -0
  41. ddpp_ns_llada4_s42/active_loop_log.jsonl +0 -0
  42. ddpp_ns_llada4_s42/results.json +10 -0
  43. ddpp_ns_llada8_s3/active_loop_log.jsonl +0 -0
  44. ddpp_ns_llada8_s3/oracle_timeline.jsonl +0 -0
  45. ddpp_ns_llada8_s3/results.json +10 -0
  46. ddpp_online_anneal_s0/active_loop_log.jsonl +0 -0
  47. ddpp_online_anneal_s0/oracle_timeline.jsonl +0 -0
  48. ddpp_online_anneal_v2_s3/active_loop_log.jsonl +0 -0
  49. ddpp_online_anneal_v2_s3/oracle_timeline.jsonl +0 -0
  50. ddpp_online_anneal_v2_s3/results.json +10 -0
beam_fa_s3/results.json ADDED
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+ {
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+ "method": "beam_fa",
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+ "best_fa": 0.14743909239768982,
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+ "total_oracle_calls": 50005,
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+ "wall_sec": 7242.218780994415,
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+ "seed": 3
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+ }
beam_fa_s42/oracle_timeline.jsonl ADDED
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beam_fa_tweedie_s0/results.json ADDED
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+ {
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+ "method": "beam_fa",
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+ "best_fa": -0.14103354513645172,
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+ "total_oracle_calls": 62144,
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+ "wall_sec": 7206.433374166489,
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+ "seed": 0
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+ }
beam_fa_tweedie_s2/oracle_timeline.jsonl ADDED
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beam_fa_tweedie_s42/oracle_timeline.jsonl ADDED
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ddpp_beam_cvar_s0/active_loop_log.jsonl ADDED
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ddpp_beam_cvar_s42/active_loop_log.jsonl ADDED
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ddpp_beam_cvar_tweedie_s0/active_loop_log.jsonl ADDED
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ddpp_beam_cvar_tweedie_s1/oracle_timeline.jsonl ADDED
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ddpp_cvar_s2/oracle_timeline_N600_cvar.jsonl ADDED
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ddpp_cvar_s2/results.jsonl ADDED
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+ {"oracle_budget": 600, "variant": "cvar", "cvar_top_frac": 0.2, "n_train_steps": 1200, "best_fa": 0.2777736783027649, "top10_mean": 0.06390976533293724, "n_generated": 35115, "infer_sec": 7140.150672912598}
ddpp_cvar_s3/oracle_timeline_N600_cvar.jsonl ADDED
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ddpp_cvar_s3/results.jsonl ADDED
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+ {"oracle_budget": 600, "variant": "cvar", "cvar_top_frac": 0.2, "n_train_steps": 1200, "best_fa": 0.2747690677642822, "top10_mean": -0.06347510889172554, "n_generated": 32442, "infer_sec": 7128.154457092285}
ddpp_cvar_s3/summary.json ADDED
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+ [
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+ {
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+ "oracle_budget": 600,
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+ "variant": "cvar",
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+ "cvar_top_frac": 0.2,
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+ "n_train_steps": 1200,
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+ "best_fa": 0.2747690677642822,
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+ "top10_mean": -0.06347510889172554,
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+ "n_generated": 32442,
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+ "infer_sec": 7128.154457092285
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+ }
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+ ]
ddpp_lb_cvar_expA_s3/collected_molecules.csv ADDED
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ddpp_lb_cvar_expA_s3/results.json ADDED
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+ {
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+ "best_fa": 0.44615834951400757,
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+ "best_smiles": "CC1(C)CCCCN1S(=O)(=O)N1CN=C(c2ccc(Cl)c(Cl)c2Cl)c2ccccc21",
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+ "top10_mean_fa": -0.6652165212188706,
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+ "collection_best_fa": -0.026287633925676346,
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+ "n_collected": 20706,
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+ "n_final": 1000,
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+ "total_oracle_calls": 21706,
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+ "tau_cvar": -0.9755762219429016,
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+ "n_top20pct": 4142,
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+ "wall_sec": 5623.969891548157
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+ }
ddpp_lb_cvar_expA_s42/collected_molecules.csv ADDED
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ddpp_lb_cvar_expA_s42/results.json ADDED
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+ {
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+ "best_fa": -0.8573520183563232,
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+ "best_smiles": "Cc1cc(F)c(F)cc1N=C(O)c1ccc(F)cc1",
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+ "top10_mean_fa": -1.6846527379067218,
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+ "collection_best_fa": -0.20658349990844727,
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+ "n_collected": 18549,
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+ "n_final": 611,
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+ "total_oracle_calls": 19160,
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+ "tau_cvar": -0.9788904190063477,
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+ "n_top20pct": 3710,
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+ "wall_sec": 7245.259987831116
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+ }
ddpp_lb_nocvar_expA_s0/collected_molecules.csv ADDED
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ddpp_mcts_cvar_s0/active_loop_log.jsonl ADDED
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ddpp_mcts_cvar_s0/oracle_timeline.jsonl ADDED
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ddpp_mcts_cvar_s0/results.json ADDED
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+ {
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+ "method": "ddpp_mcts_cvar",
3
+ "oracle": "fa",
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+ "best_score": 0.6292111277580261,
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+ "top10_mean": 0.44793667197227477,
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+ "total_calls": 20708,
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+ "wall_sec": 7239.2590091228485,
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+ "seed": 0,
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+ "tau_mode": "cvar",
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+ "search": "mcts"
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+ }
ddpp_mcts_cvar_s1/results.json ADDED
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+ {
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+ "method": "ddpp_mcts_cvar",
3
+ "oracle": "fa",
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+ "best_score": 1.5077911615371704,
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+ "top10_mean": 0.6509170889854431,
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+ "total_calls": 23436,
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+ "wall_sec": 7218.79806137085,
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+ "seed": 1,
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+ "tau_mode": "cvar",
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+ "search": "mcts"
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+ }
ddpp_mcts_cvar_s2/results.json ADDED
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+ {
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+ "method": "ddpp_mcts_cvar",
3
+ "oracle": "fa",
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+ "best_score": 0.9744882583618164,
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+ "top10_mean": 0.40167840123176574,
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+ "total_calls": 19096,
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+ "wall_sec": 7202.830886602402,
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+ "seed": 2,
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+ "tau_mode": "cvar",
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+ "search": "mcts"
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+ }
ddpp_mcts_cvar_tweedie_s2/active_loop_log.jsonl ADDED
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ddpp_mcts_cvar_tweedie_s2/oracle_timeline.jsonl ADDED
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ddpp_mcts_cvar_tweedie_s42/oracle_timeline.jsonl ADDED
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ddpp_nocvar_s2/oracle_timeline_N600_no_cvar.jsonl ADDED
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ddpp_nocvar_s2/results.jsonl ADDED
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+ {"oracle_budget": 600, "variant": "no_cvar", "cvar_top_frac": null, "n_train_steps": 1200, "best_fa": 0.21603301167488098, "top10_mean": -0.2867785133421421, "n_generated": 33751, "infer_sec": 7086.011516332626}
ddpp_nocvar_s2/summary.json ADDED
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+ [
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+ {
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+ "oracle_budget": 600,
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+ "variant": "no_cvar",
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+ "cvar_top_frac": null,
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+ "n_train_steps": 1200,
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+ "best_fa": 0.21603301167488098,
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+ "top10_mean": -0.2867785133421421,
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+ "n_generated": 33751,
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+ "infer_sec": 7086.011516332626
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+ }
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+ ]
ddpp_ns_llada16_s1/active_loop_log.jsonl ADDED
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ddpp_ns_llada16_s1/oracle_timeline.jsonl ADDED
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ddpp_ns_llada16_s1/results.json ADDED
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+ {
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+ "method": "ddpp_online_cvar",
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+ "oracle": "fa",
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+ "best_score": -0.08963717520236969,
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+ "top10_mean": -0.16143082976341247,
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+ "tau_mode": "cvar"
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ddpp_ns_llada16_s2/active_loop_log.jsonl ADDED
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ddpp_ns_llada16_s2/oracle_timeline.jsonl ADDED
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ddpp_ns_llada16_s2/results.json ADDED
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+ {
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+ "method": "ddpp_online_cvar",
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+ "oracle": "fa",
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+ "best_score": -0.07920338213443756,
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+ "top10_mean": -0.129908499866724,
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+ "seed": 2,
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+ }
ddpp_ns_llada1_s1/active_loop_log.jsonl ADDED
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ddpp_ns_llada4_s0/oracle_timeline.jsonl ADDED
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ddpp_ns_llada4_s1/oracle_timeline.jsonl ADDED
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ddpp_ns_llada4_s1/results.json ADDED
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+ {
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+ "method": "ddpp_online_cvar",
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+ "oracle": "fa",
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+ "best_score": -0.10156426578760147,
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+ "seed": 1,
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+ "tau_mode": "cvar"
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+ }
ddpp_ns_llada4_s42/active_loop_log.jsonl ADDED
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ddpp_ns_llada4_s42/results.json ADDED
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+ {
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+ "method": "ddpp_online_cvar",
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+ "oracle": "fa",
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+ "best_score": 0.2633080780506134,
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+ "total_calls": 5898,
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+ }
ddpp_ns_llada8_s3/active_loop_log.jsonl ADDED
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ddpp_ns_llada8_s3/oracle_timeline.jsonl ADDED
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ddpp_ns_llada8_s3/results.json ADDED
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+ {
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+ "method": "ddpp_online_cvar",
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+ "oracle": "fa",
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+ "best_score": 0.0563029870390892,
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+ "total_calls": 5718,
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+ "seed": 3,
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+ "tau_mode": "cvar"
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+ }
ddpp_online_anneal_s0/active_loop_log.jsonl ADDED
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ddpp_online_anneal_s0/oracle_timeline.jsonl ADDED
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ddpp_online_anneal_v2_s3/active_loop_log.jsonl ADDED
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ddpp_online_anneal_v2_s3/oracle_timeline.jsonl ADDED
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ddpp_online_anneal_v2_s3/results.json ADDED
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+ {
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+ "method": "ddpp_online_anneal",
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+ "oracle": "fa",
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+ "best_score": 1.2190824747085571,
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+ "total_calls": 14226,
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+ "wall_sec": 7200.271230697632,
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+ "seed": 3,
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+ "tau_mode": "anneal"
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+ }