tsantosh7/en_covid19_ner

COVID 19 Bio Annotations

The dataset was taken from https://github.com/davidcampos/covid19-corpus

Dataset The dataset was then split into several datasets each one representing one entity. Namely, Disorder, Species, Chemical or Drug, Gene and Protein, Enzyme, Anatomy, Biological Process, Molecular Function, Cellular Component, Pathway and microRNA. Moreover, another dataset is also created with all those aforementioned that are non-overlapping in nature.

Other Dataset Formats The datasets are available in two formats IOB and Spacy's JSONL format.

IOB: https://github.com/tsantosh7/COVID-19-Named-Entity-Recognition/tree/master/Datasets/BIO

SpaCy JSONL: https://github.com/tsantosh7/COVID-19-Named-Entity-Recognition/tree/master/Datasets/SpaCy

Feature	Description
Name	en_covid19_ner
Version	0.0.0
spaCy	>=3.2.4,<3.3.0
Default Pipeline	transformer, ner
Components	transformer, ner
Vectors	0 keys, 0 unique vectors (0 dimensions)
Sources	n/a
License	n/a
Author	Santosh Tirunagai

Label Scheme

View label scheme (10 labels for 1 components)

Component	Labels
ner	ANAT, CHED, COMP, DISO, ENZY, FUNC, PATH, PRGE, PROC, SPEC

Accuracy

Type	Score
ENTS_F	92.50
ENTS_P	91.40
ENTS_R	93.62
TRANSFORMER_LOSS	311768.03
NER_LOSS	371171.50